Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66250 752 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 692 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G11820 576 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G13560 451 / 9e-155 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT2G05790 344 / 1e-113 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 343 / 2e-112 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 337 / 4e-111 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 336 / 5e-110 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 321 / 1e-104 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G34480 302 / 6e-97 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002295 [exp] 970 / 0 AT1G66250 753 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10013465 [exp] 735 / 0 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10007929 [exp] 699 / 0 AT2G01630 730 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10034607 [exp] 675 / 0 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10031456 [exp] 553 / 0 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039179 [exp] 478 / 3e-165 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10013758 [exp] 442 / 9e-152 AT3G13560 595 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10015151 [exp] 342 / 2e-112 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10012937 [exp] 328 / 5e-108 AT5G56590 617 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G086400 [exp] 815 / 0 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.017G130200 [exp] 811 / 0 AT1G66250 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G108500 [exp] 754 / 0 AT2G01630 708 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G133200 [exp] 731 / 0 AT2G01630 721 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.011G006100 [exp] 583 / 0 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G010500 [exp] 573 / 0 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.003G218500 [exp] 484 / 4e-168 AT3G13560 594 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.001G006500 [exp] 462 / 1e-159 AT3G13560 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.018G068600 [exp] 344 / 4e-113 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 329 / 1e-107 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10004044 pacid=23156713 polypeptide=Lus10004044 locus=Lus10004044.g ID=Lus10004044.BGIv1.0 annot-version=v1.0 ATGGCTCTATCAAAGTCTTTTCAACTCTTTCTTATTCTTGCTCTTTCAGTCTTATTTGCTGCTGCTGCTGCAGCTGCTCCTGATGATGAAGAGCCATTCA TTGGTGTAAATATAGGCACAGACCTGTCAGACATGCCACATCCAACTCAAGTAGTAGCCCTTCTCAAAGCACAACAGATCAAGAACATCCGCCTATACGA TGCAGACCGCGGAATGCTAGTCGCCCTTGCAAGTTCCAACATCAAGGTCATGGTCTCCGTACCCAACGACCAGCTTCTCGGCATAGGCCAATCCAACGCC ACAGCAGCCAATTGGGTCTCCAAAAACGTCGTTGCTCACTACCCTGCCACCAACATCACAGCCATCTGTGTCGGCTCCGAAGTCCTCAGCACCCTACCCA ATGCAGCACCTGTCCTAGTCAACGCCCTCAAGTACATCCACTCGGCACTTGTGGCCTCGAATCTCGACCGTCAGATCAAAGTGTCGACTCCTCTCCCTTC GTCATTAATCCTTGACTCGTTCCCTCCTTCCCAGGCGTTCTTTAACCGGTCTTTGAACTCGGTCATGATCCCGATGTTGAGTTTCTTGCAGTCCACGGAT TCTTACCTCATGCTCAACATCTACCCTTACTATGACTATATGCAATCCAACGGTGTTATACCTTTGGACTATGCATTACTCAAGCCGCTCCCTCCGAACA AAGAAGCTGTAGATGCCAACACATTGGTTCACTACTCTAACGTATTTGATGCAATGGTGGATGCTGCCTATTTCGCAATGTCCTTCCTCAACTTCACCAA CATCCCGGTTGTCGTGACCGAATCGGGTTGGCCATCCAAAGGCGATCCGAACGAACCGGATGCGACTCTCGACAATGCCAATACTTACAACAGCAATCTG ATCAGGCATGTGTATAACAAGACCGGGACACCGAAGCACCCTGGGATTGCGGTGAGCACTTTCATCTATGAGCTTTACAATGAGGATGTGAAGGCAGGAT CCGTGTCGGAGAAGAATTGGGGTCTGTTTAATGCGAATGGTGAGCCAGTTTATAACTTGCGTTTGACCGGATCGGGATCCTTGTTGGCGAATGATACTGC GAATGAAACGTACTGCACAGTTCGAGATGGTGCTGATCCTAAGATGTTGCAAGCTGCTCTGGATTGGGCGTGTGGACCGGGTAAAGTCGATTGTTCTGCA TTGTTGCAAGGGGAGGCGTGTTATGAACCGGACAATGTGATTGCACATGCTACTTATGCCTTTGATGCTTACTATACTCAGATGGGGAAGAGTCCTGATT CTTGTGATTTCAAAGGGGTGGCTACTATCAGTACTACTAATCCAAGTCATGGTACTTGTATATACCCTGGAAGTAGTGGGAAGATCAATGGGACGATGGT GAATGTGACTGCTCCATCAATGAACTCAACTGCTTCGGAGGCACCTGCTGCTGGAGATCATAGTGTCGTTCATTTGACAATGCTTGTTGTATCGTTTGTG ATGATGAGCTTATTAGCTTTGTTGTAG
AA sequence Show only first row Show all	>Lus10004044 pacid=23156713 polypeptide=Lus10004044 locus=Lus10004044.g ID=Lus10004044.BGIv1.0 annot-version=v1.0 MALSKSFQLFLILALSVLFAAAAAAAPDDEEPFIGVNIGTDLSDMPHPTQVVALLKAQQIKNIRLYDADRGMLVALASSNIKVMVSVPNDQLLGIGQSNA TAANWVSKNVVAHYPATNITAICVGSEVLSTLPNAAPVLVNALKYIHSALVASNLDRQIKVSTPLPSSLILDSFPPSQAFFNRSLNSVMIPMLSFLQSTD SYLMLNIYPYYDYMQSNGVIPLDYALLKPLPPNKEAVDANTLVHYSNVFDAMVDAAYFAMSFLNFTNIPVVVTESGWPSKGDPNEPDATLDNANTYNSNL IRHVYNKTGTPKHPGIAVSTFIYELYNEDVKAGSVSEKNWGLFNANGEPVYNLRLTGSGSLLANDTANETYCTVRDGADPKMLQAALDWACGPGKVDCSA LLQGEACYEPDNVIAHATYAFDAYYTQMGKSPDSCDFKGVATISTTNPSHGTCIYPGSSGKINGTMVNVTAPSMNSTASEAPAAGDHSVVHLTMLVVSFV MMSLLALL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66250			O-Glycosyl hydrolases family 1...		Lus10004044 [exp]	0	1
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10015928 [exp]	1.0	0.9394
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10000542 [exp]	2.4	0.9231
AT1G78560			Sodium Bile acid symporter fam...		Lus10013700 [exp]	3.9	0.9236
AT2G37020			Translin family protein (.1.2)		Lus10020710 [exp]	5.3	0.9260
AT2G35350		PLL1	poltergeist like 1 (.1)		Lus10000896 [exp]	5.3	0.9219
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10010924 [exp]	6.0	0.9298
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005074 [exp]	10.5	0.9154
AT5G10160			Thioesterase superfamily prote...		Lus10015830 [exp]	11.1	0.9281
AT2G32840			proline-rich family protein (....		Lus10003918 [exp]	12.2	0.8979
AT5G58760		DDB2	damaged DNA binding 2 (.1)		Lus10036179 [exp]	12.2	0.8600

Compare expression of checked genes

Lus10004044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.