Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66345 437 / 8e-149 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 157 / 1e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 144 / 5e-37 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G02150 145 / 6e-37 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40400 140 / 1e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G03560 140 / 2e-35 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G26680 137 / 9e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G39710 138 / 1e-34 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 138 / 2e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 136 / 3e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002294 [exp] 885 / 0 AT1G66345 447 / 2e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027974 [exp] 157 / 6e-41 AT1G19290 480 / 1e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 152 / 6e-39 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016727 [exp] 143 / 6e-37 AT5G61990 345 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037968 [exp] 146 / 7e-37 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 143 / 3e-36 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 143 / 5e-36 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 140 / 2e-35 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008185 [exp] 140 / 5e-35 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G090800 [exp] 557 / 0 AT1G66345 499 / 1e-172 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G035700 [exp] 164 / 2e-43 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.001G236800 [exp] 154 / 7e-40 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 149 / 3e-38 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074500 [exp] 147 / 4e-38 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G040200 [exp] 149 / 5e-38 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G003700 [exp] 147 / 7e-38 AT1G11710 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034300 [exp] 142 / 8e-37 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046200 [exp] 144 / 9e-37 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 144 / 1e-36 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004045 pacid=23156721 polypeptide=Lus10004045 locus=Lus10004045.g ID=Lus10004045.BGIv1.0 annot-version=v1.0 ATGCATTTCCTCCGCCGACTCCTTCCACTTGCTACTCCCTCAGCATTCACGAGTCGCAGCTTCCGATCTTTCCCTAGCCTGCGGCTACCACCTCCTCCAA CCTTCCTCCTCTCCGGTCGAGAAAATCAAACGCTCGTAAAATCCATCTCCAATTCCCTGAGAACCGGCTGCAATTGGGACTCCCTCACTGAAAAATTCGG TTCCATAACCTTCAACGACTCACTAACCGGACAAATCCTGCTGGAACTGAGAGAGCCCCACGACGCGAAACGAGCTCTAAGGTTCTTCCACTGGTCAGCA GCTCAACGGCGTAACAACACCCTCCATGGCGTCTACACATACTGCATAATGGTCCACATCCTAGTCGGAGCGCGGCTAATCACCGATGCTCGAGCTTTAC TCGAATCAGTCCTGAAGAGAAACTCGGAAAAATTCGAGGTTGCGGACTCGCTGATCGACAGTTACAGAGTCACGATCTCGAATCCGCTCGTGTATAACCT CTTGGTTCAGGGATACGCGAAGCTGAGATTGCTCGAGGTTGGATTCGAGGTCTGCTGTTACTTGGAAGATCATCACGGGGTTTCGTTAACGTTAATCAGT TACAACACGCTGATTCAATTCGTTCAGAGATCTCACGAGATTGAGCTGATGTGGAAGGTTTACGAGCGGATGATTAGCAAGAGGATATATCCAGATGAAG CGACGATTAGAACTGTGGTTGCTGGATTATGCAAGGAAGGAAAGTTACAGGAATTGATTGGAATATTGGATAAGATTCAGGGGAAGATATCGAAGAATCG CTCTCCTTTGATGATCATTAATACTGGTTTGATCCTGAGGATTTTGGAAGATGGAAGGATTGAAGTTGGGATGGGTTTATTGAGATTGATGTTGCAGAAG AACATGATAATCGACACGGTGGCTTACTCATTGATCGTTCACGCCAAAGTGAAACTCGGCGACTTGAGTTCCGCACAACAAGTGTTCGACGAAATGCTGA AAAGAGGATTCGACACTAATTCATTCTGTTACACTTCATTCGTAGAAGGTTACTGCAAGTCCGACAATGTGGATTTAGCGAACCAGATGTTCAACCAAAT GAAAAGCAATGGATTGAAACCGTATCGAGAAACGTTCAACCATCTCATCGAAGGATGTGCAGATGCAGGGAGAGTAGAAGAATGTCTCGGATATTGTTCC GAGATGGTGAGCGAGGGATTTGGACCGTCGATCTCTGCATTCAACGACATGCTGACGAGATTGAATGAGGCGAACGATGTGAATCGAGCTAACGAGATGC TGACGTGTATGATGGATAAGGGGTTGTTGTCGCCTGACGAAGTGACGTACTCGAGGCTGATGGCCGCTTACGCGAGAAGCGGCGAGGTTGAGGGAGTGGT GAAACTGTACTATGAGTTGGAGTATAAAGGTATTTGTCCTGGAGAGTTGGGGTTTAGGGCTTTGATTAGTAGCTTGAAAGAGAGTGGGAAGGTGGAGGAA GCAAGGAAGTTCTTGAAGGTTATGAGAGATCGTGGTTTTGAGTCCAGGATTGGATGTTGTTGA
AA sequence Show only first row Show all	>Lus10004045 pacid=23156721 polypeptide=Lus10004045 locus=Lus10004045.g ID=Lus10004045.BGIv1.0 annot-version=v1.0 MHFLRRLLPLATPSAFTSRSFRSFPSLRLPPPPTFLLSGRENQTLVKSISNSLRTGCNWDSLTEKFGSITFNDSLTGQILLELREPHDAKRALRFFHWSA AQRRNNTLHGVYTYCIMVHILVGARLITDARALLESVLKRNSEKFEVADSLIDSYRVTISNPLVYNLLVQGYAKLRLLEVGFEVCCYLEDHHGVSLTLIS YNTLIQFVQRSHEIELMWKVYERMISKRIYPDEATIRTVVAGLCKEGKLQELIGILDKIQGKISKNRSPLMIINTGLILRILEDGRIEVGMGLLRLMLQK NMIIDTVAYSLIVHAKVKLGDLSSAQQVFDEMLKRGFDTNSFCYTSFVEGYCKSDNVDLANQMFNQMKSNGLKPYRETFNHLIEGCADAGRVEECLGYCS EMVSEGFGPSISAFNDMLTRLNEANDVNRANEMLTCMMDKGLLSPDEVTYSRLMAAYARSGEVEGVVKLYYELEYKGICPGELGFRALISSLKESGKVEE ARKFLKVMRDRGFESRIGCC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66345			Pentatricopeptide repeat (PPR)...		Lus10004045 [exp]	0	1
AT5G60670			Ribosomal protein L11 family p...		Lus10015085 [exp]	9.1	0.7675
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10014969 [exp]	13.2	0.7518
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10021027 [exp]	23.1	0.7533
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10003546 [exp]	31.5	0.7401
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10029401 [exp]	37.3	0.7307
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10032565 [exp]	38.1	0.6915
AT3G55605			Mitochondrial glycoprotein fam...		Lus10030157 [exp]	46.9	0.7063
AT3G55605			Mitochondrial glycoprotein fam...		Lus10001017 [exp]	59.9	0.7026
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10038396 [exp]	60.2	0.6933
AT1G50270			Pentatricopeptide repeat (PPR)...		Lus10023251 [exp]	75.4	0.6698

Compare expression of checked genes

Lus10004045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.