Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 659 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 608 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 472 / 3e-148 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 448 / 3e-139 Leucine-rich repeat protein kinase family protein (.1) AT5G56040 445 / 3e-138 Leucine-rich receptor-like protein kinase family protein (.1.2) AT2G33170 437 / 7e-135 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G24240 431 / 2e-132 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17750 425 / 1e-130 AtPEPR2 PEP1 receptor 2 (.1) AT5G48940 423 / 2e-129 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G20140 425 / 3e-129 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002293 [exp] 1717 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10020935 [exp] 689 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 681 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 584 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 566 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 560 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10020936 [exp] 536 / 4e-176 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 505 / 3e-162 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10023677 [exp] 432 / 3e-133 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G123800 [exp] 768 / 0 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 750 / 0 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124100 [exp] 707 / 0 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124200 [exp] 704 / 0 AT4G08850 743 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129100 [exp] 703 / 0 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G122500 [exp] 699 / 0 AT1G35710 846 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.012G124300 [exp] 698 / 0 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G261900 [exp] 685 / 0 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G124400 [exp] 685 / 0 AT4G08850 644 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060400 [exp] 678 / 0 AT4G08850 728 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004046 pacid=23156723 polypeptide=Lus10004046 locus=Lus10004046.g ID=Lus10004046.BGIv1.0 annot-version=v1.0 ATGAATCCATTAGTATCCAGAAACTTACGTGTTCTGCTGCTGCTCTTTATCTCCATCTCTGCAGCTGCAAATCAGGAAGCTGAAGCTCTTCTGAAATGGA AATCCACTCTAAACAACGCAACCTGTTTCTCTTCGTGGGTTGCCGGAACCGCCCCTTGCGATTCCACCTGGGTCGGAATCTCCTGCAATGGTCAGGGAAG CATTGCCAACATAACCATTGTTGATTCCGGCCTCACTGCCACCCTCGACACCTTCAATTTCTCGTCGTTTCCAAACCTTGTCTCTCTAAGCCTTAGAAAC AACTCTCTTTACGGGTTCATCCCTTCTCATTTGGCAAACCTTTCGAAGCTTTCCTTCCTTGACTTGAGTTGGAACCATTTCTATGGTGGTATCCCATCTG AGATTGGTTCGTTGGCGAGATTGACCTCGCTCTCGTTAGCTCGGAATAACCTCAATGGCTCGATCCCAACTTCCGTGTTTAACCTGACGGATTTGTCCCT TCTTAGATTGGATGTCAACCAACTGAGTGACTATGATCCTGAAAAGATCGGAAAGCTGACGTCTTTGACCACCCTCAGGTTGGCGTACAATAGCTTTTCT GGTCCAGTACCTGCCGCTATCGGAAACCTGACAAACTTGTCGATCCTCCAGCTTGCCTGGAACTATTTCTCCGGTTCCATTCCGGAAGAGATTTGTTCCT TGAAAGCCCTCACAAAGCTCGACTTGGCTGGTAATAACCTGACAGGCCAAATTCCACCCTTCATAGGTAACCTGACTCAGCTCAACAATCTCTTCCTTTC CCGGAACAGACTTTCAGGACAGATTCCAAGCGTGATCGGGAATTTGAAGTCTCTCGGTGATCTTCAGCTCTTCACCAACTTCCTGACAGGTTCGATCCCA CCTTCTGTTGGAAACCTGAAAGGCCTGGTCAGCCTGGCTCTTTCAGGAAACCAACTTTCCGGTTCCATTCCTGAAGAAATCGGTGGGTTGGAATCTCTAA AGGTCTTAAACTTGAACACCAACAATCTCACTGGTTCAGTCCCTTCATCGATCGGAAACATCACCAACATCACGTATATCGGTCTGGCGGGGAACCAACT CTCCGGAAGTCTGCCTGTAGAGTTCAACAATCTCACATCTCTACGAGGTTTTGATGTTCCTGCGAACAGACTGACCGGCTCTCTTCCTCCAGACATTTGC ATAGGCCGGGTCCTGACCGTCTTCACAGCTTATAACAACTCCTTCACTGGTCCTATGCCCAGAAGCTTAAAGAATTGCAGCAGCTTGAAGAGGCTCAGGC TTAACATGAACCAACTCACAGGAAACATATCTGAATATTTTGGGTATTATCCCGTCCTGAAAGTTGCAGACTTGAGCGACAACAGGTTACATGGCGACCT CAAACCATTTAAATGGGACATTCTATACAACTTGTCAACTCTGGCGATCGCCAGGAACAACCTTTCAGGTGAAATACCGACCGAGGTGTGGAAAACACCA CAGTTGAACTTGTTGGACCTGTCGTCCAACAGACTAACCGGCCCGATTCCAGACGAACTCGGTCGGTTAAGGCTGATCAGCCTTTCCCTGAACGACAACC AACTCTCAGGTCAGGTTCCACTCGGATTGGGGAAGTTATTAGAGCTTGAATCTCTGAATCTGGGTGGAAACAATCTCAACGGTCCAGTTCCGAAACAGCT GGGGAATAGCCCGAAACTCCGGCTGCTGAATCTGAGCATGAATATGTTCACAGGCAGTGTCCCTCCAGACATTGGCAATTTGCAGACTCTTATCACTCTG GATCTCAGCCACAACTCGCTGACCGGAGATATTCCACGAGGGCTCGGAAACTTGTTGTTCTTGGAGACTCTGAATCTCTCCAGGAATTCGTTCTTGGGGT CCATCCCCAACGGCAAATGGCTGAGCTTAGAAGCTGTGAATGTGTCGTATAATCAATTGAAGGGTCCGATTCCTGACACGGATACCTTCCGTCGAGCTCC TTTCGAATCGTTGAGAAGCAATAAGAATCTCTGCGGCAATAACTCTTTTCTAAACCCTTGCCCGGCGCAGGACAGCCACGAATTTAAAGAAAGCAAGCGA CCTAGATACAAGATTGTTTTCCCTACCTTAGCCGGAGGCTTGGTCTTGATTCTGGTGTCAAACGTTGTTGTGTTCGTCGTTTATCGAAGACTTAAAGCGA GAAATGCAGACTCGGGGAATTATTATTTGTACATTTTCTCGAGCTGGGGATTAGACAAAGGGGAGTTGACGTACGAGGGAATCGTTCAGGCTACGGACTC GTTCGATGCCAAGCACATGATCGGATCAGGGTCGTCTGGGTCGGTTTACAAAGCGGCCTTGAACAACAAGGCCGTGGCAGTGAAGAAACTCCATGATCGA TCCGACGAGGAAGCGGGGAGAATAAGGTCGAATTGGAAAGCGTTCAGGAGCGAGATAAGGGCGCTGACGAATATCAAGCATCGAAACATTGTGAAGCTGT ATGGGTACTTCTCGAACGTCGATCACTCGCTTCTGGTGTATGAATTCATGGAGAGAGGAAGCCTGAGGACGGTTCTGAGAGACGACGAGCAGGCGCAGGA ATTGGACTGGCCCAAGAGGGTGAACGTCGTCAAAGGAGTGGCGAGTGCATTGGAATATATGCACCATGAATGTTGTCCACCGTTTATTCACAGAGACATC TCTTCGAACAATGTGTTGTTGGATTCGGATCATGAGGCTCATGTCTCTGATTTCGGCACTGCTCGGTTCCTAAGGCCGGACGACCGGAGCTCGACCTCGT TTGCCGGCACTTTTGGCTATGTGGCTCCAGGTGTGCTTTCTTTTTACATGCTCTGGCTCTTACGTGGTTCGCAAGTTTCGTATGTTCATGAACTTGATTA TATTGCAGAGAGAGCTTACTCGGAGAAAGTGGATGAGAGATGCGATGTGTACAGCTTTGGAGCTGTGGCGCTTGAAGTGATATTGGGGAAGCATCCAGGA GACCTCATCTCATCGCTTTCAACGCCGTCTTCTTCTTCTTCAGAGGTCCGGCTGGAAGACTGGATTGATGATAGGATCTCGGGACCAAGTGAGGTTGGTG AAGTCGATAAGGAAGTGGTTGCTATCGCAAGGCTGGCGTTGGCTTGTGTGCATGTTGAACCGAGTTCTCGACCAACAATGCAACAAGTCACCATGGAGCT CGTCCCATTTGTGATGCCTCCATTGACGCATCCATTCTCTCAAGTCACTTTGCAGGAGCTGCTCTTGGCTTCTCCCGTAACAATGCCCTAA
AA sequence Show only first row Show all	>Lus10004046 pacid=23156723 polypeptide=Lus10004046 locus=Lus10004046.g ID=Lus10004046.BGIv1.0 annot-version=v1.0 MNPLVSRNLRVLLLLFISISAAANQEAEALLKWKSTLNNATCFSSWVAGTAPCDSTWVGISCNGQGSIANITIVDSGLTATLDTFNFSSFPNLVSLSLRN NSLYGFIPSHLANLSKLSFLDLSWNHFYGGIPSEIGSLARLTSLSLARNNLNGSIPTSVFNLTDLSLLRLDVNQLSDYDPEKIGKLTSLTTLRLAYNSFS GPVPAAIGNLTNLSILQLAWNYFSGSIPEEICSLKALTKLDLAGNNLTGQIPPFIGNLTQLNNLFLSRNRLSGQIPSVIGNLKSLGDLQLFTNFLTGSIP PSVGNLKGLVSLALSGNQLSGSIPEEIGGLESLKVLNLNTNNLTGSVPSSIGNITNITYIGLAGNQLSGSLPVEFNNLTSLRGFDVPANRLTGSLPPDIC IGRVLTVFTAYNNSFTGPMPRSLKNCSSLKRLRLNMNQLTGNISEYFGYYPVLKVADLSDNRLHGDLKPFKWDILYNLSTLAIARNNLSGEIPTEVWKTP QLNLLDLSSNRLTGPIPDELGRLRLISLSLNDNQLSGQVPLGLGKLLELESLNLGGNNLNGPVPKQLGNSPKLRLLNLSMNMFTGSVPPDIGNLQTLITL DLSHNSLTGDIPRGLGNLLFLETLNLSRNSFLGSIPNGKWLSLEAVNVSYNQLKGPIPDTDTFRRAPFESLRSNKNLCGNNSFLNPCPAQDSHEFKESKR PRYKIVFPTLAGGLVLILVSNVVVFVVYRRLKARNADSGNYYLYIFSSWGLDKGELTYEGIVQATDSFDAKHMIGSGSSGSVYKAALNNKAVAVKKLHDR SDEEAGRIRSNWKAFRSEIRALTNIKHRNIVKLYGYFSNVDHSLLVYEFMERGSLRTVLRDDEQAQELDWPKRVNVVKGVASALEYMHHECCPPFIHRDI SSNNVLLDSDHEAHVSDFGTARFLRPDDRSSTSFAGTFGYVAPGVLSFYMLWLLRGSQVSYVHELDYIAERAYSEKVDERCDVYSFGAVALEVILGKHPG DLISSLSTPSSSSSEVRLEDWIDDRISGPSEVGEVDKEVVAIARLALACVHVEPSSRPTMQQVTMELVPFVMPPLTHPFSQVTLQELLLASPVTMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08850			Leucine-rich repeat receptor-l...		Lus10004046 [exp]	0	1
AT2G14830			Regulator of Vps4 activity in ...		Lus10039808 [exp]	3.2	0.8625
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034036 [exp]	4.0	0.8995
					Lus10015230 [exp]	4.4	0.9034
AT2G35615			Eukaryotic aspartyl protease f...		Lus10035668 [exp]	6.4	0.7994
					Lus10031595 [exp]	6.6	0.8449
AT3G29970			B12D protein (.1)		Lus10035132 [exp]	9.8	0.8668
					Lus10010306 [exp]	10.2	0.8660
					Lus10019810 [exp]	12.0	0.8660
AT3G58860			F-box/RNI-like superfamily pro...		Lus10003216 [exp]	12.4	0.7405
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	13.2	0.8638

Compare expression of checked genes

Lus10004046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.