Plant FIBer expression Database

Lus10004047 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27040 380 / 2e-135 VPS22 EAP30/Vps36 family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002292
[exp]
439 / 1e-158 AT4G27040 442 / 2e-159 EAP30/Vps36 family protein (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G424600
[exp]
392 / 2e-140 AT4G27040 437 / 1e-157 EAP30/Vps36 family protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF04157 EAP30 EAP30/Vps36 family
Representative CDS sequence
>Lus10004047 pacid=23156727 polypeptide=Lus10004047 locus=Lus10004047.g ID=Lus10004047.BGIv1.0 annot-version=v1.0
ATGAAAGAGCAGCTCGCCACTTTCCGCAATCAGCTCGAAGAATTCGCCCGCAAACACAAGAATGATATCCGCAAGAACCCTACATTCAGGGCACAATTTC
ATGAGATGTGTGCTAAAGTTGGAGTTGATCCTTTGGCCTCTAACAAAGGTTTCTGGGCGGAGCTTCTAGGGATTGGTGACTTCTATTATGAGCTCGGGGT
ACAAATTGTGGAGATATGTTTAAACACAAGACCTCACAATGGAGGTCTGATCAACCTGCAAGAGCTCTGCAATCTGCTTCGCCAGAAACGAAAAGGTGAC
CGTGAAGCTGTGTCTGAAGATGACTGTTTGCGTGCCATTACCAAACTCAAGGTACTTGGAAGTGGTTTTGAGGTGATATCTGTTGGTAAGAAAAAGCTTG
TTCGGTCTGTGCCAACAGAACTGAACAAAGACCACAATGCAATCCTGGAGCTGGCTCAGGTGGAAGGATTTGTCACTGTTGATGATGTCGAAAGACGGCT
CTCTTGGACAACAGGTCGAGCAATTGGTGCCTTAGACACACTATTGGAGGAAGGTCTTGGGATGGTTGATGATGGGCATAGAGATGGCAAGCGAAGATAC
TGGTTTCCCTGTGTCTCTTCCATATCTGCAGTGGTCGGGCCTGACATGTAA
AA sequence
>Lus10004047 pacid=23156727 polypeptide=Lus10004047 locus=Lus10004047.g ID=Lus10004047.BGIv1.0 annot-version=v1.0
MKEQLATFRNQLEEFARKHKNDIRKNPTFRAQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLNTRPHNGGLINLQELCNLLRQKRKGD
REAVSEDDCLRAITKLKVLGSGFEVISVGKKKLVRSVPTELNKDHNAILELAQVEGFVTVDDVERRLSWTTGRAIGALDTLLEEGLGMVDDGHRDGKRRY
WFPCVSSISAVVGPDM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G27040 VPS22 EAP30/Vps36 family protein (.1... Lus10004047
[exp]
0 1
AT4G10170 SNARE-like superfamily protein... Lus10002944
[exp]
2.2 0.9303
AT1G21200 Trihelix sequence-specific DNA binding ... Lus10018886
[exp]
8.1 0.9074
AT1G04555 unknown protein Lus10014458
[exp]
8.8 0.9181
AT3G55920 Cyclophilin-like peptidyl-prol... Lus10030408
[exp]
8.8 0.8934
AT4G02080 ASAR1, ATSARA1C... secretion-associated RAS super... Lus10031408
[exp]
11.4 0.8941
AT5G20090 Uncharacterised protein family... Lus10038250
[exp]
12.1 0.9121
AT5G13240 transcription regulators (.1) Lus10007961
[exp]
12.7 0.8946
AT2G26070 RTE1 REVERSION-TO-ETHYLENE SENSITIV... Lus10030001
[exp]
13.3 0.9107
AT1G79660 unknown protein Lus10024088
[exp]
13.5 0.8796
AT1G15340 MBD10 methyl-CPG-binding domain 10 (... Lus10019406
[exp]
14.2 0.8961

Lus10004047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.