Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74670 102 / 6e-30 GASA6 GA-stimulated Arabidopsis 6, Gibberellin-regulated family protein (.1) AT3G02885 94 / 2e-26 GASA5 GAST1 protein homolog 5 (.1) AT5G15230 87 / 7e-24 GASA4 GAST1 protein homolog 4 (.1.2) AT2G30810 85 / 5e-23 Gibberellin-regulated family protein (.1) AT3G10185 82 / 7e-22 Gibberellin-regulated family protein (.1) AT2G39540 64 / 5e-15 Gibberellin-regulated family protein (.1) AT5G59845 62 / 8e-14 Gibberellin-regulated family protein (.1) AT1G10588 61 / 2e-13 Gibberellin-regulated family protein (.1.2) AT4G09600 61 / 2e-13 GASA3 GAST1 protein homolog 3 (.1) AT1G22690 60 / 8e-13 Gibberellin-regulated family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029340 [exp] 103 / 2e-30 AT2G30810 108 / 3e-32 Gibberellin-regulated family protein (.1) Lus10018016 [exp] 102 / 2e-29 AT1G74670 110 / 2e-32 GA-stimulated Arabidopsis 6, Gibberellin-regulated family protein (.1) Lus10030680 [exp] 96 / 3e-27 AT5G15230 131 / 5e-41 GAST1 protein homolog 4 (.1.2) Lus10005241 [exp] 95 / 7e-27 ND 96 / 4e-27 Lus10042203 [exp] 95 / 7e-27 AT1G74670 138 / 6e-44 GA-stimulated Arabidopsis 6, Gibberellin-regulated family protein (.1) Lus10002059 [exp] 95 / 8e-27 AT1G74670 132 / 1e-41 GA-stimulated Arabidopsis 6, Gibberellin-regulated family protein (.1) Lus10008612 [exp] 94 / 1e-26 AT1G74670 138 / 8e-44 GA-stimulated Arabidopsis 6, Gibberellin-regulated family protein (.1) Lus10042012 [exp] 89 / 2e-24 AT1G74670 96 / 6e-27 GA-stimulated Arabidopsis 6, Gibberellin-regulated family protein (.1) Lus10024216 [exp] 87 / 2e-23 AT1G74670 106 / 1e-30 GA-stimulated Arabidopsis 6, Gibberellin-regulated family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G124200 [exp] 122 / 1e-37 AT3G02885 101 / 1e-29 GAST1 protein homolog 5 (.1) Potri.001G254100 [exp] 111 / 2e-33 AT1G74670 111 / 4e-33 GA-stimulated Arabidopsis 6, Gibberellin-regulated family protein (.1) Potri.006G044400 [exp] 103 / 5e-30 AT1G74670 108 / 9e-32 GA-stimulated Arabidopsis 6, Gibberellin-regulated family protein (.1) Potri.001G315500 [exp] 88 / 3e-24 AT2G30810 91 / 5e-25 Gibberellin-regulated family protein (.1) Potri.017G083000 [exp] 78 / 5e-20 AT5G15230 116 / 3e-35 GAST1 protein homolog 4 (.1.2) Potri.013G113400 [exp] 66 / 2e-15 AT2G18420 96 / 2e-27 Gibberellin-regulated family protein (.1) Potri.014G020100 [exp] 65 / 3e-15 AT5G59845 99 / 9e-29 Gibberellin-regulated family protein (.1) Potri.019G083900 [exp] 64 / 2e-14 AT1G22690 103 / 1e-29 Gibberellin-regulated family protein (.1.2.3) Potri.001G297700 [exp] 62 / 7e-14 AT2G14900 96 / 2e-27 Gibberellin-regulated family protein (.1) Potri.009G092600 [exp] 59 / 5e-13 AT2G14900 99 / 2e-28 Gibberellin-regulated family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02704 [flax] [poplar] GASA Gibberellin regulated protein
Representative CDS sequence Show only first row Show all	>Lus10004048 pacid=23156722 polypeptide=Lus10004048 locus=Lus10004048.g ID=Lus10004048.BGIv1.0 annot-version=v1.0 ATGGATAGCCGGCAAGCAAACCCTCTGCTGGTGGCTACGGTGGCTCTGCTTCTCTTGCTGGCATTCTCCGCCACCGTTTCCGAAGCTAATTACCATGCTA AGCTCCGCCCTTCTGATTGTAAGCCGAAGTGCAACTACAGATGCTCGGCGACGTCGCACAAGAAGCCGTGCATGTTCTTCTGCCAGAAGTGTTGCACAAA GTGTCTGTGTGTTCCGCCGGGAACTTACGGGAACAAGCAGGTGTGCCCTTGCTACAACCAGTGGAAGACCAAAGAAGGCGCCCCCAAGTGCCCGTAG
AA sequence Show only first row Show all	>Lus10004048 pacid=23156722 polypeptide=Lus10004048 locus=Lus10004048.g ID=Lus10004048.BGIv1.0 annot-version=v1.0 MDSRQANPLLVATVALLLLLAFSATVSEANYHAKLRPSDCKPKCNYRCSATSHKKPCMFFCQKCCTKCLCVPPGTYGNKQVCPCYNQWKTKEGAPKCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10004048 [exp]	0	1
					Lus10005454 [exp]	1.4	0.9265
AT5G57830			Protein of unknown function, D...		Lus10010774 [exp]	4.8	0.9305
AT3G59110			Protein kinase superfamily pro...		Lus10029788 [exp]	4.9	0.9221
AT2G26510		PDE135	pigment defective embryo 135, ...		Lus10032758 [exp]	9.4	0.8690
AT3G54000			unknown protein		Lus10017206 [exp]	12.2	0.8498
AT4G36210			Protein of unknown function (D...		Lus10024307 [exp]	13.4	0.8440
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10023407 [exp]	13.8	0.8854
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10038550 [exp]	14.4	0.8893
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10014807 [exp]	16.4	0.8985
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10016633 [exp]	16.6	0.9054

Compare expression of checked genes

Lus10004048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.