Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66330 389 / 6e-133 senescence-associated family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002290 [exp] 648 / 0 AT1G66330 384 / 7e-132 senescence-associated family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129100 [exp] 522 / 0 AT1G66330 475 / 2e-166 senescence-associated family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004049 pacid=23156716 polypeptide=Lus10004049 locus=Lus10004049.g ID=Lus10004049.BGIv1.0 annot-version=v1.0 ATGGAACTCAGTGCAAGCAAGGTCTCAACCAGTGCCTTTGCAACTCATAGGAGAGCGACCTCTAAATCACAAGGCGTTACATGTTCACTTTCCAAGTCAT GTCCTACACTGCCACAAAGCAAGCTTCAGCAAATTGTGAATGGATGTCTCCCTAATGCGAAACTCTTCTTGTCTGATGAGAGGCTTTGGGGGATTCATGA AAAACCAACCAATGCCATGGTCTCTCAGCGATCCTCTGTGCTGTGTCAATCAATCCGAACTCCTAGAACAAAGGGAAAAGAACGTAGCCAAACTTCCAGT ACGACAATTGGAGAAGAGGAAGAGCAGGCAAGCATGGATGAAAGAAGCATTCATTCGACACTAGGCCTAGCTGAAGCTTGTAAATTTGTTCAAAATGATG CTCGATACGTAAATGAAAGGGCTCGCAATGACATTGTGTTGCTCTCAAGAGGGATAATGAGTCTGGATGCCCGAGCACGGAGAGATGTAGCTATTATTGG GTCTGAGTTTCTCAAACTGGATGCTCGAGCTAGGGAGGACACAATGAAAATTGACAGTGATGTGAAAATGAAAGCAGAGCGTCTTCACCATATCACAACT ATCTTAAAGGACAGAGCTCAGTCAAGATTGAAGAAAGCTGCCGCTAAGCACTGGAGTAATGGTGCTTTAAAGGATGATCTGCGTAGAGCTGACTTTCGAG CAAAGCAGCGTGCCATGGAAGATGCTCTAATGGCACTGGAGTTTGTGCAGAACGTCCATGACAGGATGGTTTCAAAGATCTCCCTGAGTCAGCAATACGA TGTGGCTGATAGGATGATGGGCCAAATAACCCTAGAGAAAAATGGAAGAACTTCAGACATGTTCCCTGGAGAAGTATCTTCAGACCGTATTGCTGCTATT CAGGATGCTTATTTTAGCATGGCATATGCACTCTCCGAAGCCGATGGAATAGACTACAGCGATCCTGAAGAGCTGGAACTTCTGATCACAACTCTGATTG ATCTTGATGCTATGGATGGAAAAACTAGCGTGTCGCTGTTAGCAGAATGTTCGAGCTCCCCAGACGAGAGCACTAGGCAAGCGTTAGCCAATGCATTAGC AGCAGCTCCATCAATGTGGGCGTTGGGCAATGCAGGGATGGGAGCACTTCAGAGACTGGCTGAAGATAGAAACCCGACGATTGCAGCTGCAGCAGCCAAC ACAATCTATGAGCTGAAGAAGCAGTGGGAAATCGAAGAGGGGGATAACTGGAGGTTTATGGTGAACCTAAAACCAGAAGAATCTGAAGGAGATATCCCAG AAGACGATGCGAGCTGA
AA sequence Show only first row Show all	>Lus10004049 pacid=23156716 polypeptide=Lus10004049 locus=Lus10004049.g ID=Lus10004049.BGIv1.0 annot-version=v1.0 MELSASKVSTSAFATHRRATSKSQGVTCSLSKSCPTLPQSKLQQIVNGCLPNAKLFLSDERLWGIHEKPTNAMVSQRSSVLCQSIRTPRTKGKERSQTSS TTIGEEEEQASMDERSIHSTLGLAEACKFVQNDARYVNERARNDIVLLSRGIMSLDARARRDVAIIGSEFLKLDARAREDTMKIDSDVKMKAERLHHITT ILKDRAQSRLKKAAAKHWSNGALKDDLRRADFRAKQRAMEDALMALEFVQNVHDRMVSKISLSQQYDVADRMMGQITLEKNGRTSDMFPGEVSSDRIAAI QDAYFSMAYALSEADGIDYSDPEELELLITTLIDLDAMDGKTSVSLLAECSSSPDESTRQALANALAAAPSMWALGNAGMGALQRLAEDRNPTIAAAAAN TIYELKKQWEIEEGDNWRFMVNLKPEESEGDIPEDDAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66330			senescence-associated family p...		Lus10004049 [exp]	0	1
AT1G27510			Protein of unknown function (D...		Lus10039967 [exp]	4.0	0.8928
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10042894 [exp]	8.8	0.8724
AT5G52970			thylakoid lumen 15.0 kDa prote...		Lus10023013 [exp]	9.6	0.8849
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10013789 [exp]	9.9	0.8658
AT1G08380		PSAO	photosystem I subunit O (.1)		Lus10013310 [exp]	12.5	0.8880
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10035560 [exp]	14.4	0.8613
AT1G66330			senescence-associated family p...		Lus10002290 [exp]	17.8	0.8323
AT4G29990			Leucine-rich repeat transmembr...		Lus10025849 [exp]	19.4	0.8756
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10019290 [exp]	20.0	0.8854
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10042197 [exp]	22.6	0.8337

Compare expression of checked genes

Lus10004049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.