Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70750 191 / 7e-51 Protein of unknown function, DUF593 (.1) AT5G16720 121 / 3e-28 Protein of unknown function, DUF593 (.1) AT1G74830 90 / 2e-18 Protein of unknown function, DUF593 (.1) AT1G08800 78 / 2e-14 Protein of unknown function, DUF593 (.1.2) AT2G30690 76 / 6e-14 Protein of unknown function, DUF593 (.1) AT1G18990 66 / 8e-11 Protein of unknown function, DUF593 (.1) AT3G54740 62 / 8e-10 Protein of unknown function, DUF593 (.1.2) AT4G13630 58 / 3e-08 Protein of unknown function, DUF593 (.1.2) AT5G06560 55 / 2e-07 Protein of unknown function, DUF593 (.1) AT4G30830 53 / 6e-07 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002289 [exp] 1128 / 0 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1) Lus10006566 [exp] 81 / 3e-15 AT1G08800 246 / 5e-68 Protein of unknown function, DUF593 (.1.2) Lus10005527 [exp] 79 / 1e-14 AT1G08800 242 / 5e-67 Protein of unknown function, DUF593 (.1.2) Lus10033854 [exp] 75 / 2e-13 AT2G30690 213 / 6e-59 Protein of unknown function, DUF593 (.1) Lus10014743 [exp] 72 / 1e-12 AT2G30690 204 / 3e-56 Protein of unknown function, DUF593 (.1) Lus10024869 [exp] 71 / 3e-12 AT1G08800 191 / 4e-51 Protein of unknown function, DUF593 (.1.2) Lus10018782 [exp] 71 / 4e-12 AT1G08800 189 / 2e-50 Protein of unknown function, DUF593 (.1.2) Lus10015990 [exp] 55 / 2e-07 AT5G06560 467 / 8e-162 Protein of unknown function, DUF593 (.1) Lus10020457 [exp] 54 / 2e-07 AT1G18265 77 / 7e-16 Protein of unknown function, DUF593 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129200 [exp] 364 / 1e-111 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1) Potri.004G087600 [exp] 360 / 3e-110 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1) Potri.010G109900 [exp] 243 / 8e-68 AT1G70750 277 / 2e-80 Protein of unknown function, DUF593 (.1) Potri.008G132200 [exp] 243 / 2e-67 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1) Potri.005G220600 [exp] 99 / 8e-21 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.002G042500 [exp] 89 / 5e-18 AT2G30690 195 / 2e-52 Protein of unknown function, DUF593 (.1) Potri.013G043400 [exp] 85 / 1e-16 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.019G012200 [exp] 83 / 5e-16 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) Potri.019G007802 [exp] 70 / 4e-12 AT1G08800 221 / 3e-61 Protein of unknown function, DUF593 (.1.2) Potri.012G073400 [exp] 65 / 1e-10 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10004050 pacid=23156708 polypeptide=Lus10004050 locus=Lus10004050.g ID=Lus10004050.BGIv1.0 annot-version=v1.0 ATGGCGGCCAACAAGTTTGCAACAATGCTCCACAGAAGCACCAACAGCAGAGTGGTGGTGATCTTAGTCTACGCTGTTTTGGAATGGATCCTCATCTTCC TCCTCCTTGTCAACTCCTTCCTCTCCTTCCTCATCTCCCAATTCGCCTCCTACTTCGGCCTCCCGCAACCTTGCCTCCTCTGCTCCCGTATCGACCACCA CCTCATCACTTCCTCTCCTTCCTCCTCTTCCTCCTACACGCACCTCATCTGTGAGTCTCATGCCAAGGAGATTGTCTGCAGCTCCGGATTTCGGATGAAG GATGATGATAGCGACGACGAGCATGTTGATCGTCAGAAGATTGACGGTGTTTGTGAGGTCGGTGGTGATTTTTTCAGCCTTGGAGATGGAATGGAGGTGG TTTTGAAAGAGGAGGAGTTGTTCACGGAGCTGGAGTTTGTTCAGAATCCTCCTTCTTCCGATGGTCATCATGACAAGTTTATCGAGTACTGTTTGGGGGA AGATAATTCGCTTGAGATTATAGGGCTTGATTATCAAAATCACGGTGATGATCCTGGCTGTGAGTTCGATCGATTAGTCCCTGTCGAACTCATCGATTCT TCTACTTCTGCTTTCCTGGATGGATCGTTCAAATCTCATTTCTCAGAGCTGGAAAATCATCAGAATGAAGGTCTAGTTGGTGTTGAAGAAGAAGAAGAAG AAGAAGAAGAAGAAGGAAAAGTTGACGAAGATTCTTCTATTCCTACTTTCCAGGATGGATCATTCAAAACTAATATCTCGGAGCTGGAAAATCATCAGAA TGATGATGATGATGAAGAACAAGCAGAAGAAAAAGTTGACGAAGAAGGAAAAGTTGGTGAAGCACAACAAGAAGAAGTTGCATGTACGGAAATTAGTAGA GATCAGAATGTTGAGAGATCTTCAGTTCCGATTCTTCCAGAGACGAGCACTGTATCAGCTTACAATCCAAACATTACAGAACTGGAGCCCGAGATATTTG GAGAGGAAGACGATGTGGTGATTGGAGGCAAAATTGACGAACAAGAAACGGCAGAAATGATTAACCCAGAGAATCATTCAGTCCGAGAAGAAGTAGGAGA AGACACTACATTAGTGGAGGTCAATCACGTTGACGAACTTCACGATCTCTCTGTAAAGCAAGTTGATGAAGAATCGACTCCATTCCTACGCCAGGAAGAA GAAGATCTTCGCTCCGAAAATGGCAAAGAAACTGAACCTGCAAATCCCCTTCATGAACAATCGCAGAGCCTTGCTGTCAGCAATGGACTAAGCGAGTTGC ATTCACTAGATCCAATGAACGATTCTAACAATTCGGTTGACAAGAATGGCGAGGCATGTCCAGAACCTACCGATTCATGGGCGGAGGAGTCATTAGATGG AAGTGTACGGAGTGAGACTGAGAGCAGTAGTGATCCAGTCGTCACTGTAGAAAAGCTAAAGAAAGCTCTGAAGTCCGAGAGGAAAGCGCTGAATGCTCTA TATGCAGAGCTGGAAGAAGAGAGGAACGCCTCAGCAATAGCTGCAAACCAGACCATGGCAATGATAAACCGGCTTCAAGAAGAAAAGGCAGCAATGCAGA TGGAGGCATTACAGTATCAGAGAATGATGGAGGAACAGTCCGAGTACGACCAGGAGGCCTTACTGCTTCTGAACGAGCTGATGTTCAAGAGGGAAAAGGA GAAGCAAGATCTCGAAAAGGAGTTGGATGTGTATCGGAAGAGACTTCTGGAATATGATGCCAAGGAGAAGCTAAGATTTATGAGAACAAGAAGAAGAAGT ATGAATTCCTCTTCTGCTACTACCTGCAGTAATGGAGAAGAAATCGACGAGTTATCGTCGATTGACCTTAATCGTGAGGCTAAGGACGAGAGTGGGAGCG GGAGCTTAAGCGAGAATCCAGAAAGCAGCAATGATCATAGTAGTAGTGTTCATCATCATGATGATGATGAGAATATCAACTTGGAGGAAATAGCTATGGA CTGTGTGAAGCAAATGAGTTCGCTTGACGATTCATTGGCCGAGTTTGAAGAAGAGAGGCTTTCAATTCTAGATCAGTTGAAAATGCTGGAGGAGAAGCTA CTCAACTTAAACGACACGAACGAGGTAACGGATGATGTTGATTCGGTAGAGGAAAATGGAGGTTCGAATGAGCTATCATCGAATGGACACGATCACCCCG AGAGGAAAACGATGGGATCAATGGCGAAGAGCCTACTACCTTTGTTGGATGCTGCTGAGGATGACGAGACGGAGGAAGGATTGATCAGCGATAATAACAA TGGGGATGAATCTGGAATAGAAAATTCTTCGCTCTGCAGATTTGACAGCAAGCAGCTAGCTATTGAAGACGAAGTAGACCACGTGTATGAACGTCTTCAA GCTCTTGAAGCTGACAGGGAGTTCCTTAAACACTGTATGACCTCAATCCAAAAGGGGGACAAAGGAATGGACCTTCTCCAGGAAATACTACAGCATCTAC GTGATCTGAGATCCGTAGAGATACGCGTCAGGAGCATGAGTGAGAGCCCTCTGAGTTGA
AA sequence Show only first row Show all	>Lus10004050 pacid=23156708 polypeptide=Lus10004050 locus=Lus10004050.g ID=Lus10004050.BGIv1.0 annot-version=v1.0 MAANKFATMLHRSTNSRVVVILVYAVLEWILIFLLLVNSFLSFLISQFASYFGLPQPCLLCSRIDHHLITSSPSSSSSYTHLICESHAKEIVCSSGFRMK DDDSDDEHVDRQKIDGVCEVGGDFFSLGDGMEVVLKEEELFTELEFVQNPPSSDGHHDKFIEYCLGEDNSLEIIGLDYQNHGDDPGCEFDRLVPVELIDS STSAFLDGSFKSHFSELENHQNEGLVGVEEEEEEEEEEGKVDEDSSIPTFQDGSFKTNISELENHQNDDDDEEQAEEKVDEEGKVGEAQQEEVACTEISR DQNVERSSVPILPETSTVSAYNPNITELEPEIFGEEDDVVIGGKIDEQETAEMINPENHSVREEVGEDTTLVEVNHVDELHDLSVKQVDEESTPFLRQEE EDLRSENGKETEPANPLHEQSQSLAVSNGLSELHSLDPMNDSNNSVDKNGEACPEPTDSWAEESLDGSVRSETESSSDPVVTVEKLKKALKSERKALNAL YAELEEERNASAIAANQTMAMINRLQEEKAAMQMEALQYQRMMEEQSEYDQEALLLLNELMFKREKEKQDLEKELDVYRKRLLEYDAKEKLRFMRTRRRS MNSSSATTCSNGEEIDELSSIDLNREAKDESGSGSLSENPESSNDHSSSVHHHDDDENINLEEIAMDCVKQMSSLDDSLAEFEEERLSILDQLKMLEEKL LNLNDTNEVTDDVDSVEENGGSNELSSNGHDHPERKTMGSMAKSLLPLLDAAEDDETEEGLISDNNNGDESGIENSSLCRFDSKQLAIEDEVDHVYERLQ ALEADREFLKHCMTSIQKGDKGMDLLQEILQHLRDLRSVEIRVRSMSESPLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16720			Protein of unknown function, D...		Lus10004050 [exp]	0	1
AT1G19835			Plant protein of unknown funct...		Lus10024325 [exp]	3.7	0.9122
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009460 [exp]	4.5	0.9052
AT5G54200			Transducin/WD40 repeat-like su...		Lus10027671 [exp]	5.5	0.8846
AT1G19835			Plant protein of unknown funct...		Lus10024324 [exp]	5.5	0.9090
AT2G47500			P-loop nucleoside triphosphate...		Lus10010301 [exp]	7.1	0.8873
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Lus10012847 [exp]	7.1	0.8399
AT1G64650			Major facilitator superfamily ...		Lus10000337 [exp]	7.5	0.9058
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10024301 [exp]	9.2	0.8808
AT1G48840			Plant protein of unknown funct...		Lus10026581 [exp]	10.8	0.8328
AT2G47500			P-loop nucleoside triphosphate...		Lus10009851 [exp]	11.4	0.8736

Compare expression of checked genes

Lus10004050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.