Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011397 [exp] 72 / 6e-16 AT4G00930 83 / 8e-16 COP1-interacting protein 4.1 (.1) Lus10006453 [exp] 53 / 4e-09 AT5G37190 85 / 3e-16 COP1-interacting protein 4 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004051 pacid=23156706 polypeptide=Lus10004051 locus=Lus10004051.g ID=Lus10004051.BGIv1.0 annot-version=v1.0 ATGGATAAAGAAGTCAATGATATTGATGAGCGATCTGTGAACGAAGCTGGAGATGGAAATTTGGTTTCAGAACCTAATAATATTACTGATATTAATGGCT TTCAAAATCCAGTACTTGATGAGATGCATAGAGTTGCAACAGAAAAACCAGCGGTGTCCCAGACTATCTCTACAGAAGTGCAGAAAGAAGTTCATTTTGA ATTGCCTGAGGCTGCTCCATCTATGAATAGTTTTGCATTGAAGAAACCGAAGAAATCAAGAAAGTATCTATCTATATTGAGTTTGGAGCTTGGTTTGGAC CAGGCCAGTGAGTCTTGGGAACGGAATCAACCACATTCTTGA
AA sequence Show only first row Show all	>Lus10004051 pacid=23156706 polypeptide=Lus10004051 locus=Lus10004051.g ID=Lus10004051.BGIv1.0 annot-version=v1.0 MDKEVNDIDERSVNEAGDGNLVSEPNNITDINGFQNPVLDEMHRVATEKPAVSQTISTEVQKEVHFELPEAAPSMNSFALKKPKKSRKYLSILSLELGLD QASESWERNQPHS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004051 [exp]	0	1
AT4G02610			Aldolase-type TIM barrel famil...		Lus10024848 [exp]	27.5	0.5935
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10003854 [exp]	52.4	0.6817
AT5G27260			unknown protein		Lus10035759 [exp]	140.5	0.6147
					Lus10019266 [exp]	148.8	0.5985
AT1G19835			Plant protein of unknown funct...		Lus10034510 [exp]	252.5	0.5864
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10021535 [exp]	253.8	0.5923

Compare expression of checked genes

Lus10004051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.