Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31430 684 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G15930 480 / 3e-162 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 461 / 5e-155 SLO1 SLOW GROWTH 1 (.1) AT4G14820 424 / 6e-140 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 424 / 1e-139 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 419 / 8e-138 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 407 / 1e-133 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 406 / 1e-131 unknown protein AT3G29230 394 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 390 / 3e-126 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002288 [exp] 1210 / 0 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018223 [exp] 442 / 1e-146 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 441 / 3e-146 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 435 / 1e-144 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020918 [exp] 429 / 2e-143 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 403 / 9e-133 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 402 / 2e-131 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010320 [exp] 392 / 5e-129 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015898 [exp] 395 / 3e-128 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G088600 [exp] 886 / 0 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G031600 [exp] 522 / 1e-177 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 483 / 1e-162 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G019500 [exp] 475 / 1e-160 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.013G103600 [exp] 449 / 9e-151 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 451 / 1e-150 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G217900 [exp] 436 / 2e-145 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.006G105700 [exp] 432 / 1e-143 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 427 / 2e-141 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G011000 [exp] 427 / 3e-140 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004052 pacid=23156744 polypeptide=Lus10004052 locus=Lus10004052.g ID=Lus10004052.BGIv1.0 annot-version=v1.0 ATGGCCGAATTAAAAGAGGTACATTGCCAGATGTATCGGAACCTGCTACATCAAGACGCCGACGCTCTCAGCAAGCTCGTGGTCTTTTGTACGGACAATC GTAATGGAAACCTCAGTTATGCGCAGAGAGTCTTCGATGTTATCGAGAAGCCTTGTTTGTTTATATACAATCTCATGATCAAAGTGAATGCGAAGCAAGG CAGTTTCAAAAGATGTCTGTTGCTCTTTAGCAGGCTTAGGGGAGATGGTTTATGGCCTGATAATTTCACCTACCCGTTTGTCCTTAAAGCTATCGGATGT TTGGGGAAGTCTCTGGAGGCTGAAAGAGTTCACGGGTTTGTTGCTGTTACGGGTCTCCAGTGCGATACCTATGTGATTAATTCCTTGATGGATATGTATG CTCATTTGGGTCGAATCGATGTGGCACGAAAACTGTTTGATAACATGCCTGAGAGAGATGTGGTTTCTTGGAATGTGCTTATATCCGGGTATGTTAGGCT TCGGGAGTTTGAGGATGCTATCAATGCTTTTTGCTGTATGAGGAAGAAAAGTGGTTTGAGACCTGACGAGGCTACAGTTGCAAGCACTCTCTCGGCATGT GCCGCTTTGAAAGGCTTAGAACTTGGGAAACAAATTCACCGTTTTGTTACAGATGAACTCGAATGCACTTTGATTATCGGCAATGCACTACTGGACATGT ACTGCAAGTGTGGTTGTTTGAAAGTGGCTCGAGAACTATTCGACACCATGCCGGCTAAAAATGTCATATGTTGGACAAGTATGGTGTCTGGTTACATCAC TTGTGGCGAGTTGGACGAGGCCAGAATATTGTTTGAGAGGAGTCCTGGGAGAGACATAGTTCTTTGGACTGCTATGATAAATGGTTATGTACAATTTAAT CGATTCGATGAAGCCGTAGAGCTCTTCAGAGATATGCAAGCTAGGAGAATTAGGCCGGACAAGTTCTTATTGGTTGCTCTTCTGACAGGCTGTGCTCAAA CTGGTGCTCTAGAGCAAGGTAAGTGGATACATGAATACATCGAAGAAAATGGAATAGTAGTTGATGCTATAGTCGGTACTGCTCTTATCGACATGTATGC AAAATGTGGATGCATCGATCGGGCATTGAGGATCTTCTATGCTTTACGTGATAAAGATACAGCCTCATGGACTGCAGTCATATGTGCGCTTGCAATGAAC GGGAAAATGTACGAGGCCATAAATTTGTTTTCGGAAATGAAGCAACTTGGGATCAGACCTGATGATGTTACTTATGTTGGTGTTTTAAGTGCTTGTAGCC ATGGGGGATTGGTGAAGGAAGGTCGCGAATTCTTCAATTCCATGACTGAATTGCACCAGATTCAACCCAAGTTAGAACACTATGGTTGCTTTATCGACTT ACTTGGTCGTGCCGGATTGTTGAATGAAGCAGAGGAAATGATAGAAAAGATTCCATATGTAGATCCGGTGGATGTTATACCTATATATGGTTCTCTGGTT AGTGCGTGTAGAATCTATAGGAACACTGAGATAGGTGAGAGGGTTGCTAAAAAGCTGGTGACTATGGCATCAGATGATGCCAGTGTGCATACACTTCTAA CGAATATATATGCCTCCACAAGCAGATGGCAAGAGGTAAAAGATGTGAGAAGTACAATGAAAGATCTTGGTGTTAAGAAGACCCCTGGTTGTAGCTTGAT TGTGGTTGATGGTGTCATCCATGAGTTCACTGTTGGCGGTCCGTCTCACCCGACAGTGACGGAAATATATTCCACCTTGGACGGATTGGCAAGTCCTTTG TTGGTTTCAGAAAATATGGTGATAAAAGAAGAGTTCCCGGCAGTTAGTTAA
AA sequence Show only first row Show all	>Lus10004052 pacid=23156744 polypeptide=Lus10004052 locus=Lus10004052.g ID=Lus10004052.BGIv1.0 annot-version=v1.0 MAELKEVHCQMYRNLLHQDADALSKLVVFCTDNRNGNLSYAQRVFDVIEKPCLFIYNLMIKVNAKQGSFKRCLLLFSRLRGDGLWPDNFTYPFVLKAIGC LGKSLEAERVHGFVAVTGLQCDTYVINSLMDMYAHLGRIDVARKLFDNMPERDVVSWNVLISGYVRLREFEDAINAFCCMRKKSGLRPDEATVASTLSAC AALKGLELGKQIHRFVTDELECTLIIGNALLDMYCKCGCLKVARELFDTMPAKNVICWTSMVSGYITCGELDEARILFERSPGRDIVLWTAMINGYVQFN RFDEAVELFRDMQARRIRPDKFLLVALLTGCAQTGALEQGKWIHEYIEENGIVVDAIVGTALIDMYAKCGCIDRALRIFYALRDKDTASWTAVICALAMN GKMYEAINLFSEMKQLGIRPDDVTYVGVLSACSHGGLVKEGREFFNSMTELHQIQPKLEHYGCFIDLLGRAGLLNEAEEMIEKIPYVDPVDVIPIYGSLV SACRIYRNTEIGERVAKKLVTMASDDASVHTLLTNIYASTSRWQEVKDVRSTMKDLGVKKTPGCSLIVVDGVIHEFTVGGPSHPTVTEIYSTLDGLASPL LVSENMVIKEEFPAVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31430			Pentatricopeptide repeat (PPR-...		Lus10004052 [exp]	0	1
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016727 [exp]	5.0	0.9408
AT2G32730			26S proteasome regulatory comp...		Lus10016681 [exp]	5.2	0.9339
AT2G32730			26S proteasome regulatory comp...		Lus10007140 [exp]	8.4	0.9302
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10016048 [exp]	9.6	0.9328
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025169 [exp]	12.3	0.9351
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Lus10001987 [exp]	13.0	0.9218
AT1G17630			Pentatricopeptide repeat (PPR-...		Lus10003790 [exp]	16.3	0.9156
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10036020 [exp]	16.7	0.9219
AT1G73450			Protein kinase superfamily pro...		Lus10042297 [exp]	17.3	0.9051
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10022082 [exp]	17.3	0.9290

Compare expression of checked genes

Lus10004052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.