Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16620 98 / 7e-22 PDE120, TIC40, ATTIC40 pigment defective embryo 120, translocon at the inner envelope membrane of chloroplasts 40, hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002287 [exp] 578 / 0 AT5G16620 330 / 2e-109 pigment defective embryo 120, translocon at the inner envelope membrane of chloroplasts 40, hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G087100 [exp] 335 / 4e-111 AT5G16620 398 / 3e-136 pigment defective embryo 120, translocon at the inner envelope membrane of chloroplasts 40, hydroxyproline-rich glycoprotein family protein (.1) Potri.017G129800 [exp] 319 / 7e-105 AT5G16620 357 / 6e-120 pigment defective embryo 120, translocon at the inner envelope membrane of chloroplasts 40, hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004053 pacid=23156730 polypeptide=Lus10004053 locus=Lus10004053.g ID=Lus10004053.BGIv1.0 annot-version=v1.0 ATGGCGCTGATCTCTACTCCATCTTCCTGCTCTCCAAAATTGGTTATCGGATATCCTCCTACTTCACTCCTAAACCCTACTACTCCCCGAAGAACCCTTC CCTTCTTCCATCTCCGGAGCTGCCGAATTCTCCCTCCTCGCTCCAGATTCTACGTGTCCGCATCCTCCCAAGGTGATGTCACTCCTCCGCAGACGCAGCC GGCTGCTCGCTCAGTTACTTCCAGACGTGGAAAATCTGGAGCTGGTAATTTTGCTAGCATTTTCTCATCCAAGGGTCAGAATACGTCTTCCGTTGGTGTT ACCCCGCAACCAGTGGCTACTCCTCCTCCTCCTTCACAAGTTGGGTCACCTCTATTTTGGATTGGAGTTGGTGTGGCTTTCTCTGCCGTTTTCTCATGGG TGGCATCATATTTGAAGAAATATGCAATGCAGCAAGCTATGAAAACCATGATGAGCCAGATGAATACTCAAAATAGCCAATTTGGTGGCAATACTCCAAT TTCGCCATTCCAATTTCCAATGCCTTCCGTGCCTGAAAGCTCACCTTCACGTCCAACTTCCTCACCATCGTGGCCTGCTAGTGCACCTTCATATTCTAAA TCAGCAGTAACTGAGGCCGCTACCTCACCTGCTCCTTCTCAATCTAGGATTACTTTAGATGTTTCTGCAACAGAAGAAGCTTCACACACTAATGTGAATA ATGAAGTTGATTCTAAAGAGGACAAAAAGAAGTATGCTTTTGTGGATGTCTCTCCGGAAGATAAAGAAACCTTAGTGGGGACTCCTTTTGGAAGTGCTGA TGATGGCAATGAGACAAGCTCTATAAAGGATGCTCCATTTGAAGTAGAACATCTTATGCAGGCTTCTCAAAATGGAGCAGCTTTTAAGCAGGATACAAGT GTAGGTGCAGGTACAGCTGAGGGTCCTAATGCTACCGGGATGCTACAAAATCCAGAGTACCGTCAACAACTACAAGACATGCTAAACAATATGGGGGGAA GCAATGGATGGGACCCAAGCATGTTAGATTCCATGAAAAATTTTGATCTCAGCAGTCCTGAGGTTAAGCAGCAGTTCGATCAAATTGGCCTCACACCTGA AGAGGTCATTTCAAAAATCATGGCCAATCCTGATGTTGCTATGGCATTTCAAAACCCACGAGTGCAGCAAGCGATCATGGAATGCTCGCAAAATCCAATG AGCATAACCAAATATCAGAACGACAAGGAGATGGCAATCAAACAAGCGAAGCATTATCTTGATTTTGCAGGTTATGGATGTTTTCAACAAGATATCAGAG CTCTTCCCCGGCGTCTCTGGCTCGCCTTATTGATCAAAGCAACCATTAAATTAAAACGGGCAGCAATTAGGGAGCAAAGATCTTTGGATGAAGGAATTGG CTGA
AA sequence Show only first row Show all	>Lus10004053 pacid=23156730 polypeptide=Lus10004053 locus=Lus10004053.g ID=Lus10004053.BGIv1.0 annot-version=v1.0 MALISTPSSCSPKLVIGYPPTSLLNPTTPRRTLPFFHLRSCRILPPRSRFYVSASSQGDVTPPQTQPAARSVTSRRGKSGAGNFASIFSSKGQNTSSVGV TPQPVATPPPPSQVGSPLFWIGVGVAFSAVFSWVASYLKKYAMQQAMKTMMSQMNTQNSQFGGNTPISPFQFPMPSVPESSPSRPTSSPSWPASAPSYSK SAVTEAATSPAPSQSRITLDVSATEEASHTNVNNEVDSKEDKKKYAFVDVSPEDKETLVGTPFGSADDGNETSSIKDAPFEVEHLMQASQNGAAFKQDTS VGAGTAEGPNATGMLQNPEYRQQLQDMLNNMGGSNGWDPSMLDSMKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPDVAMAFQNPRVQQAIMECSQNPM SITKYQNDKEMAIKQAKHYLDFAGYGCFQQDIRALPRRLWLALLIKATIKLKRAAIREQRSLDEGIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10004053 [exp]	0	1
AT1G09130			ATP-dependent caseinolytic (Cl...		Lus10020649 [exp]	2.8	0.8922
AT1G72040			P-loop containing nucleoside t...		Lus10008257 [exp]	3.9	0.8904
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016405 [exp]	5.7	0.8592
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009050 [exp]	6.6	0.8896
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10033203 [exp]	8.4	0.8938
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Lus10007420 [exp]	8.7	0.8145
AT1G14810			semialdehyde dehydrogenase fam...		Lus10030759 [exp]	9.4	0.8702
AT4G19010			AMP-dependent synthetase and l...		Lus10022542 [exp]	9.7	0.8100
AT4G33760			tRNA synthetase class II (D, K...		Lus10035657 [exp]	10.5	0.8605
AT1G79050			recA DNA recombination family ...		Lus10026204 [exp]	16.7	0.8349

Compare expression of checked genes

Lus10004053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.