Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01918 90 / 4e-23 PQL3 PsbQ-like 3 (.1) AT4G21280 65 / 2e-13 PSBQ, PSBQA, PSBQ-1 PHOTOSYSTEM II SUBUNIT Q-1, photosystem II subunit QA (.1.2) AT4G05180 60 / 2e-11 PSII-Q, PSBQ, PSBQ-2 photosystem II subunit Q-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002286 [exp] 282 / 2e-99 AT2G01918 90 / 2e-23 PsbQ-like 3 (.1) Lus10018385 [exp] 55 / 2e-09 AT4G05180 275 / 3e-94 photosystem II subunit Q-2 (.1) Lus10020071 [exp] 54 / 2e-09 AT4G05180 282 / 2e-97 photosystem II subunit Q-2 (.1) Lus10007627 [exp] 54 / 4e-09 AT4G05180 281 / 7e-97 photosystem II subunit Q-2 (.1) Lus10006751 [exp] 52 / 2e-08 AT4G05180 271 / 7e-89 photosystem II subunit Q-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129700 [exp] 116 / 3e-33 AT2G01918 100 / 7e-27 PsbQ-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05757 [flax] [poplar] PsbQ Oxygen evolving enhancer protein 3 (PsbQ)
Representative CDS sequence Show only first row Show all	>Lus10004054 pacid=23156734 polypeptide=Lus10004054 locus=Lus10004054.g ID=Lus10004054.BGIv1.0 annot-version=v1.0 ATGAAGTTATTGACGAGAAGAACAGCAATATGTGGGATAGTGATGGGATTCCTGATGCAGAACCAATGCTTAAACGCAAGTGGGTTGAACTTGGATTTTG ACAGGATGATGAAGATGTCGGGTCCTTCCGCACCAACTTTGGAAGATGCAGTGACTTTAATCAGAGGTCACGCCGCGGGGTTGCTGGAAGTGAAAGAGTT GTTACAGGAGGAATCATGGTCGGATGCTCAGAGGCTGCTCAGGAAGAACTCATCAAATCTAAAGATAGACCTTTCCTCCATCATTCAGAGCAAACCTCCT GAACTCCGGCCGCGGCTCAGGTCCCTCTACTCCAATCTCTTCAACACTGTCACCAAGCTGGACTATGCAGCCAGGGATAAAGATGTGGCTATGGTATTGG AGCTGTATGAAAAGATGGCATTGGCAGTTGAGGAGGTTTTATCTTTAATCTGA
AA sequence Show only first row Show all	>Lus10004054 pacid=23156734 polypeptide=Lus10004054 locus=Lus10004054.g ID=Lus10004054.BGIv1.0 annot-version=v1.0 MKLLTRRTAICGIVMGFLMQNQCLNASGLNLDFDRMMKMSGPSAPTLEDAVTLIRGHAAGLLEVKELLQEESWSDAQRLLRKNSSNLKIDLSSIIQSKPP ELRPRLRSLYSNLFNTVTKLDYAARDKDVAMVLELYEKMALAVEEVLSLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01918		PQL3	PsbQ-like 3 (.1)		Lus10004054 [exp]	0	1
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10037822 [exp]	1.4	0.9823
AT2G30695			unknown protein		Lus10008364 [exp]	2.8	0.9741
AT2G01755			unknown protein		Lus10030691 [exp]	2.8	0.9639
AT2G38140		PSRP4	plastid-specific ribosomal pro...		Lus10002497 [exp]	4.5	0.9691
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Lus10043094 [exp]	4.9	0.9589
AT2G42220			Rhodanese/Cell cycle control p...		Lus10023820 [exp]	5.5	0.9736
AT1G27385			unknown protein		Lus10037024 [exp]	6.2	0.9426
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10008075 [exp]	7.7	0.9531
AT5G65220			Ribosomal L29 family protein ...		Lus10000745 [exp]	8.1	0.9689
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10025642 [exp]	9.9	0.9678

Compare expression of checked genes

Lus10004054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.