Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16630 758 / 0 ATRAD4 DNA repair protein Rad4 family (.1.2) AT5G49570 49 / 2e-05 ATPNG1 peptide-N-glycanase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002285 [exp] 1454 / 0 AT5G16630 668 / 0.0 DNA repair protein Rad4 family (.1.2) Lus10000108 [exp] 285 / 1e-90 AT5G16630 66 / 5e-13 DNA repair protein Rad4 family (.1.2) Lus10009734 [exp] 61 / 5e-10 AT5G16630 49 / 1e-06 DNA repair protein Rad4 family (.1.2) Lus10009179 [exp] 51 / 6e-06 AT5G49570 817 / 0.0 peptide-N-glycanase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G087400 [exp] 991 / 0 AT5G16630 786 / 0.0 DNA repair protein Rad4 family (.1.2) Potri.013G039600 [exp] 54 / 5e-07 AT5G49570 834 / 0.0 peptide-N-glycanase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF03835 [flax] [poplar] Rad4 Rad4 transglutaminase-like domain CL0125 [flax] [poplar] PF10404 [flax] [poplar] BHD_2 Rad4 beta-hairpin domain 2 CL0125 [flax] [poplar] PF10403 [flax] [poplar] BHD_1 Rad4 beta-hairpin domain 1 CL0123 [flax] [poplar] HTH PF10405 [flax] [poplar] BHD_3 Rad4 beta-hairpin domain 3 CL0125 [flax] [poplar] Peptidase_CA PF01841 [flax] [poplar] Transglut_core Transglutaminase-like superfamily
Representative CDS sequence Show only first row Show all	>Lus10004055 pacid=23156747 polypeptide=Lus10004055 locus=Lus10004055.g ID=Lus10004055.BGIv1.0 annot-version=v1.0 ATGTGTAAGTGTTTGTTTGTAGTTGGAAGTTTTATTGATTTTTTTAGGAGAAACTGGACATTAATTGATTTCTTTTTGTATTCGCTTTCGGATTTTGCAA CAGCAAAAGGCAGTGTTAGCCGTATTGCAGAAGGTCCGAATATTGCCGACATGTCAAGGAATGCGGTTGATAAAGTTGTAAGACGGGTGACAGCTCGTAG CTCATTGCGGGAAAGGAAAGAGCTAGATAACAGGTCAAAAAGTAAAGAGAAACAAGGTGTTGATGCAAAGGCTACATGGAACGAGGTGGATGCACAACGT TCTGAAAAGTTACGCAAGGAAAGGAATCAGAGGGAGGTGGGTGCCTCTAGTTGCCCTATTCAAGAGAGTGAGAATCAGATGGATGACATTGACTGGGAAG ATGGTTCTATGTCGGTGATGGATCCTGTAAAAAATAGTTCTAATCAAGGTGATGATAACCGAATGCTGACTATTGAGTTTGACACAGTACCTGATTCTTC CAAGCGGAAGCCCTCTCGTCGAGCTACTGCTGAAGAGAAGGAATTAGCTGAACTTGTGCATCGAGCTCATTTACTTTGTCTGCTTGCAAGGGGCAGAGTA GTGGATAGTGCCTGTGATGATCTTCTCATTCAGGCTTCCCTACGTTCCCTTGTACCAGCATGTTTTTTGAAGATAACGGAACACCCTAAACTTACTGCCA GAGCTTTGTCTCCTATCGTTAGTTGGTTTCATAACAATTTCCGAGTCAGGAGTGCAGGCAGCGAGAAGGGATCATTTTCTTCAGCTTTGGCTAATGCTCT TGGAAGACGTGAAGGGAGTGCAGAGGAGATTGCAGCACTGTCTGTGGCACTCTTCAGAGCCTTAAAACTTACAACTAGGTTTGTTTCTGTTCTGGATGTT GCCGCCTTAAAACCTGATTTTGATGACTGTGAATCATCAAGTCAGAGTACTAGCAGAGTGCGACGGGGAATATTTACTACTTCTACGCCTATGGTAGACA GACTGCAGGAGGAGTCCGTGTTTCCCAATCGGCATGGATTTGCTTCAAATGATTTATCCAAAAGTAAAGATACCAGCACAAGGAAGAAGAAAATTGAGTT TCCTGCTGCGGTTGAATTTAAAGCTGGAACTAGCAACTCGTCGCCTAATATTTCTCTTGGATCTATTACTGAGAAAAAACAAGGATCAAAGAGAAAAGGT GATAATGAGTTGGAGATGCAGTTGCTAATGGCGCTCTCTGCTACAGCTGTAGATCATAGTGCGGCAGTGGATGTTATGAGTCCTAGCACGAGCTGTTCTG AAGTTCTCCCTTCACTTAAAAGAACTAGAAGAGTTGCAGCTGATGGATCTACGCCCATCTCTACTGCAATTGGATCGAAAAAAATGGGATCCCCGCTGTA CTGGGCAGAAATATACTGCACAGGTGAAAACTTGACAGGAAAATGGGTGCATGTGGATGCTATAAATGCAATTCTTGACGGAGAGCATATGGTTGAAGCT GCAGCAGCTGCATGCAAAACATCTCTAAGATATGCTGTCGCATTTGCCGGAAGAGGGGCTAAAGACGTTACCCGCAGGTATTGTATGAAATGGCACAAAA TTGCATCTCAAAGAGTAAACTCCACTTGGTGGGATGATGTGTTGGCCCCATTGAGGGAGTTGGAATCAGGAGCAACAGGAGGTCAAGTGCAACTGGTAGA GAATGCTGCTAGTAGGAACTCTTTAGAGGATGTGGAGTTGGAGACTAGAGCGCTAACTGAACCTCTTCCAACAAATCAGCAAGCGTATAGAAGTCATCGT TTGTATGCACTTGAGAGATGGCTTACCAAGTTTCAGATACTTCATCCGGAAGGTCCTATTCTTGGTTTTTGTTCTGGCAAGCCAGTTTATCCTCGGACAT GTGTTCAGACTCTGAAAACAAAAGAACGATGGTTGCGCGAAGCGCTGCAGGTTAAAGTCAATGAGCTTCCGGCAAAGGTTCTGAAAGATTCAAAAAAGCT TAATAAAGCACAATCGTTTGAAGATGATGAGAATGAAGAGTGCAACTCTGAGGGAAATATTGAACTCTATGGTAAATGGCAGCTTGAACCATTACAACTA CCTATTGCTGTAAATGGGATTGTGCCAAGGAATGAACGTGGACAAGTTGATGTGTGGTCAGAGAAGTGCCTGCCAATAGGGACTGTGCACATAAGGTTGC CAAGGGTGTTTAATGTTGCCAAGAGGCTAGATATTGACTATGCACCTGCTATGGTTGGTTTTGAATTCCGAAATGGCCGTTCATTTCCTGTTTTCGATGG TATTGTTGTATGCGCCGAGTTCAAGGACGCTGTTTTGGAGGCGTACTACGAGGAGGAGGATAGAAGGAAGGCGGAAGAGAAAAGGAGAGATGAAGTAATG GCTGTTTCTAGGTGGTATCAACTTCTATCGTCCATGATAACTAGAGAAAGGCTAAACAAGTTGTATGGAGACAATCCATCAGTGCAAATTAACATCAATG CTCAGAATGCCAATAGCAAAGCAGAGAAAGACGTCAATGTCAGTCAATATGGTGGCATCCTACAGTCACCATCTGGTAGTAGTGAAGGAAACAAGATGAA AGCTAAAGTAAACGCTTCACCATATGCCCCAACAGAGGAGCACGAACACATATTTCTGGCCGAAAACGAGAGTTTTGACGAGCAAAGCTCGGTAACAACG AAACGATGCTACTGTGGCTTTTCCATTGAGGTGGAACAACTGGAGCTCAGGCTTTTTGGGAGAAGAACAAGTGATGAGAATGTGGAGACAAGGATAGTAC TGTTTAGGTACTCGTCTCAGTTGCTAACCTAG
AA sequence Show only first row Show all	>Lus10004055 pacid=23156747 polypeptide=Lus10004055 locus=Lus10004055.g ID=Lus10004055.BGIv1.0 annot-version=v1.0 MCKCLFVVGSFIDFFRRNWTLIDFFLYSLSDFATAKGSVSRIAEGPNIADMSRNAVDKVVRRVTARSSLRERKELDNRSKSKEKQGVDAKATWNEVDAQR SEKLRKERNQREVGASSCPIQESENQMDDIDWEDGSMSVMDPVKNSSNQGDDNRMLTIEFDTVPDSSKRKPSRRATAEEKELAELVHRAHLLCLLARGRV VDSACDDLLIQASLRSLVPACFLKITEHPKLTARALSPIVSWFHNNFRVRSAGSEKGSFSSALANALGRREGSAEEIAALSVALFRALKLTTRFVSVLDV AALKPDFDDCESSSQSTSRVRRGIFTTSTPMVDRLQEESVFPNRHGFASNDLSKSKDTSTRKKKIEFPAAVEFKAGTSNSSPNISLGSITEKKQGSKRKG DNELEMQLLMALSATAVDHSAAVDVMSPSTSCSEVLPSLKRTRRVAADGSTPISTAIGSKKMGSPLYWAEIYCTGENLTGKWVHVDAINAILDGEHMVEA AAAACKTSLRYAVAFAGRGAKDVTRRYCMKWHKIASQRVNSTWWDDVLAPLRELESGATGGQVQLVENAASRNSLEDVELETRALTEPLPTNQQAYRSHR LYALERWLTKFQILHPEGPILGFCSGKPVYPRTCVQTLKTKERWLREALQVKVNELPAKVLKDSKKLNKAQSFEDDENEECNSEGNIELYGKWQLEPLQL PIAVNGIVPRNERGQVDVWSEKCLPIGTVHIRLPRVFNVAKRLDIDYAPAMVGFEFRNGRSFPVFDGIVVCAEFKDAVLEAYYEEEDRRKAEEKRRDEVM AVSRWYQLLSSMITRERLNKLYGDNPSVQININAQNANSKAEKDVNVSQYGGILQSPSGSSEGNKMKAKVNASPYAPTEEHEHIFLAENESFDEQSSVTT KRCYCGFSIEVEQLELRLFGRRTSDENVETRIVLFRYSSQLLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	0	1
AT3G07610		IBM1	increase in bonsai methylation...		Lus10015260 [exp]	2.2	0.8743
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10036700 [exp]	2.6	0.8446
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10019735 [exp]	3.0	0.8437
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10016691 [exp]	3.3	0.8413
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Lus10020096 [exp]	4.5	0.8240
AT5G56730			Insulinase (Peptidase family M...		Lus10012918 [exp]	6.9	0.8446
AT1G71210			Pentatricopeptide repeat (PPR)...		Lus10008998 [exp]	6.9	0.8343
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10043479 [exp]	7.3	0.8265
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10022981 [exp]	8.0	0.8438
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10031647 [exp]	8.4	0.8455

Compare expression of checked genes

Lus10004055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.