Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14900 63 / 3e-12 HMGA high mobility group A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002284 [exp] 120 / 1e-34 AT1G14900 108 / 6e-30 high mobility group A (.1) Lus10024594 [exp] 64 / 4e-12 AT3G18035 132 / 3e-33 winged-helix DNA-binding transcription factor family protein (.1) Lus10032231 [exp] 64 / 6e-12 AT1G48620 103 / 2e-23 high mobility group A5 (.1) Lus10004328 [exp] 49 / 1e-06 AT3G18035 129 / 2e-32 winged-helix DNA-binding transcription factor family protein (.1) Lus10028911 [exp] 48 / 2e-06 AT1G48620 128 / 4e-32 high mobility group A5 (.1) Lus10014653 [exp] 45 / 1e-05 AT5G15340 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033775 [exp] 45 / 1e-05 AT5G15340 635 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006561 [exp] 41 / 0.0003 AT2G30620 115 / 1e-31 winged-helix DNA-binding transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129400 [exp] 84 / 4e-20 AT1G14900 102 / 2e-27 high mobility group A (.1) Potri.004G087500 [exp] 79 / 3e-18 AT1G14900 91 / 1e-22 high mobility group A (.1) Potri.008G132400 [exp] 76 / 6e-17 AT1G14900 107 / 4e-29 high mobility group A (.1) Potri.010G109600 [exp] 75 / 1e-16 AT1G14900 98 / 3e-25 high mobility group A (.1) Potri.015G040200 [exp] 64 / 3e-12 AT1G48620 99 / 6e-22 high mobility group A5 (.1) Potri.012G048500 [exp] 61 / 4e-11 AT1G14900 66 / 5e-12 high mobility group A (.1) Potri.002G199900 [exp] 45 / 9e-06 AT2G30620 84 / 4e-20 winged-helix DNA-binding transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00538 [flax] [poplar] Linker_histone linker histone H1 and H5 family
Representative CDS sequence Show only first row Show all	>Lus10004056 pacid=23156736 polypeptide=Lus10004056 locus=Lus10004056.g ID=Lus10004056.BGIv1.0 annot-version=v1.0 ATGTTTATGGAAATTCCTGTAGGTTATCAGATGATACTGAGCGCCATTTCAGCTCTGGATGAGAAAGACGGATCAACCAAGACATCAATTTCCTCCTACA TTGTGGAAAACTACACAAACATTCCAGAAGCGCACCAAATCGTTCTCTCCGACCACCTCAACAGGATGAAGGACAGCGGTGAGCTGGTGTTCTCGAAGAA CAACTACTCGAAACCAGGCCCCGAGGGTCCTCCTCCTAAGCGTGGCCGTGGAAGGCCTCCTAAACCCAAGGATTCATCAGCACAACCACCACCACCACCT CTGAGCAGCACTGCTGCTACTGCTGTCACTACAAGGGGTAGAGGCCGTCCTCCCAAGGAACCTAATGCGCCCCCAAAGTCTTCGAAGCCTGCCCCCAGTG GAAGGCCAAGAGGGAGACCTCGAAAGATCCCGCGTGTAGCTGATGAGGATGATGTGGCTGAGGATGAGGATCGTCCACCAATGACTGCTGGGACGGGAAG GCCGAGGGGGCGGCCACCGAAGGTGAAACCGGCTGATGCTGCTGCTGTGGCCGAGGTGAGCGTTCAGAATTAG
AA sequence Show only first row Show all	>Lus10004056 pacid=23156736 polypeptide=Lus10004056 locus=Lus10004056.g ID=Lus10004056.BGIv1.0 annot-version=v1.0 MFMEIPVGYQMILSAISALDEKDGSTKTSISSYIVENYTNIPEAHQIVLSDHLNRMKDSGELVFSKNNYSKPGPEGPPPKRGRGRPPKPKDSSAQPPPPP LSSTAATAVTTRGRGRPPKEPNAPPKSSKPAPSGRPRGRPRKIPRVADEDDVAEDEDRPPMTAGTGRPRGRPPKVKPADAAAVAEVSVQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	0	1
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10020352 [exp]	1.4	0.9816
AT1G79060			unknown protein		Lus10031795 [exp]	1.7	0.9758
AT1G14900		HMGA	high mobility group A (.1)		Lus10002284 [exp]	2.0	0.9792
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009579 [exp]	3.3	0.9526
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10009533 [exp]	3.5	0.9703
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10002538 [exp]	3.7	0.9391
AT1G04150			C2 calcium/lipid-binding plant...		Lus10000164 [exp]	3.7	0.9611
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014380 [exp]	3.9	0.9690
AT1G79060			unknown protein		Lus10031218 [exp]	4.0	0.9609
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014381 [exp]	4.2	0.9657

Compare expression of checked genes

Lus10004056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.