Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77840 406 / 4e-139 Translation initiation factor IF2/IF5 (.1) AT1G36730 311 / 6e-102 Translation initiation factor IF2/IF5 (.1) AT5G20920 60 / 5e-10 EIF2 BETA, EMB1401, EIF2BETA embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) AT5G36230 50 / 1e-06 ARM repeat superfamily protein (.1) AT1G65220 49 / 3e-06 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002283 [exp] 677 / 0 AT1G36730 505 / 6e-178 Translation initiation factor IF2/IF5 (.1) Lus10000448 [exp] 477 / 2e-167 AT1G36730 423 / 7e-147 Translation initiation factor IF2/IF5 (.1) Lus10010981 [exp] 293 / 6e-99 AT1G36730 282 / 3e-95 Translation initiation factor IF2/IF5 (.1) Lus10010980 [exp] 216 / 5e-67 AT1G36730 184 / 2e-55 Translation initiation factor IF2/IF5 (.1) Lus10007559 [exp] 57 / 8e-09 AT5G20920 385 / 3e-136 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Lus10029667 [exp] 49 / 2e-06 AT5G36230 320 / 1e-109 ARM repeat superfamily protein (.1) Lus10042703 [exp] 49 / 5e-06 AT5G36230 631 / 0.0 ARM repeat superfamily protein (.1) Lus10018182 [exp] 49 / 7e-06 AT5G36230 623 / 0.0 ARM repeat superfamily protein (.1) Lus10012186 [exp] 46 / 4e-05 AT5G20920 373 / 3e-131 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G093600 [exp] 552 / 0 AT1G77840 514 / 0.0 Translation initiation factor IF2/IF5 (.1) Potri.004G112200 [exp] 509 / 2e-179 AT1G77840 493 / 2e-173 Translation initiation factor IF2/IF5 (.1) Potri.017G122200 [exp] 495 / 8e-174 AT1G77840 456 / 1e-158 Translation initiation factor IF2/IF5 (.1) Potri.013G158400 [exp] 59 / 1e-09 AT5G20920 396 / 7e-141 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Potri.019G131200 [exp] 59 / 1e-09 AT5G20920 399 / 7e-142 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Potri.013G085600 [exp] 49 / 4e-06 AT5G36230 687 / 0.0 ARM repeat superfamily protein (.1) Potri.019G053600 [exp] 49 / 5e-06 AT5G36230 694 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01873 [flax] [poplar] eIF-5_eIF-2B Domain found in IF2B/IF5 CL0020 [flax] [poplar] TPR PF02020 [flax] [poplar] W2 eIF4-gamma/eIF5/eIF2-epsilon
Representative CDS sequence Show only first row Show all	>Lus10004057 pacid=23156739 polypeptide=Lus10004057 locus=Lus10004057.g ID=Lus10004057.BGIv1.0 annot-version=v1.0 ATGGCTCTGCAGAACATTGGTGCTTCAAACAGTGATGATGCCTTCTACAGGTACAAGATGCCTAAAATGGTTACAAAGATTGAGGGCAAAGGTAATGGTA TCAAGACTAATGTTGTGAACATGGTTGACATTGCCAAGGCTTTGGCTAGGCCAGCTTCTTACACCACCAAGTATTTTGGTTGTGAACTTGGAGCTCAATC TAAATTTGATGAGAAAACTGGCATCTCTCTAGTCAATGGCTCACACGATACTGCAAAGCTTGCTGGGCTGCTGGAGAACTTCATCAAAAAGTATGTTCAG TGCTACGGGTGTGGGAATCCAGAGACCGAGATACTTATCACTAAAAGACAGATGCTCCAACTGAAGTGCGCTGCCTGTGGATTTGTTTCAGACGTCGATA TGAGAGATAAGCTGACCACTTTTATCTTGAAGAACCCACCTGAATCAAAGAAGGGATTTAAAGACAAGAAAGCAATGAGGAGAGCTGAGAAGGAACGGCT GAAAGAAGGTGCGGCAGCTGATGAAGAGCTGAAAAAATTGAAGAAGGATGTCAAGAAGAAAGCCACATCTTCCAAGGATGGCGCAGTTAAAGCTGGAAGT ACGAAGAAGAAAGCAAGTGGATCCGATGAAGAACATTTATCGCCAACCCACAGTCAGGTTGATGAAAATGAAGAGCTTGATGATGAAGATGACGATGATG ATAATGTTCAGTGGCACACTGATACCTCTGCCGAGGCAGCCCGTCTCCGTATCCAAGAGCAATTGAGTGCTGCAACTGCTGAAATGGTCATGCTTTCTAC AATTGAAACTGAGAAGAAGGCGAAGTCAACTGCCAAAGCAAATGGCAGCCCAAAAGCTGCTTCTCCTCAACGTGAAGAGAAACCTAAAGAGGAGAATGGG AAACCGATCTCTTCGAAGACCCTTGCTGATGAAATAAAAGCAGGAATTGACGGGGGAGTAACTGCAGCACGGTTGTCTGGTCTTCTGGAGTCATTAACCG GGTCTGGTCAAGAAAAGATGGATGCTTTGTTCATGGCGCTGTTTCAGGGTATTGAGAAGGGACTGTCGAAGGAGGTTATTAAGAAGAAGAAATATCTTAT TGCCGCCATTGCCAGTGGTGGAGATTCACAGCTGCTTCTCATTGCAGCAATTCAGGGTTTCTTTGAGAACTCTAGTACAGTAAAGGAGCTCCCTCTTGTT CTTAAAGCCCTGTATGATGCTGATGTATTGGAGGAAGAGTACATTATGCAGTGGTATCAGAAGCTGAGAGCCAGCAACAAGGAATCTAAGATTGTGAAGA GCGCTGGGCCATTCATCGATTGGCTCCAGAATGCTGAATCGGAGTCGGAAGAAGAATGA
AA sequence Show only first row Show all	>Lus10004057 pacid=23156739 polypeptide=Lus10004057 locus=Lus10004057.g ID=Lus10004057.BGIv1.0 annot-version=v1.0 MALQNIGASNSDDAFYRYKMPKMVTKIEGKGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGISLVNGSHDTAKLAGLLENFIKKYVQ CYGCGNPETEILITKRQMLQLKCAACGFVSDVDMRDKLTTFILKNPPESKKGFKDKKAMRRAEKERLKEGAAADEELKKLKKDVKKKATSSKDGAVKAGS TKKKASGSDEEHLSPTHSQVDENEELDDEDDDDDNVQWHTDTSAEAARLRIQEQLSAATAEMVMLSTIETEKKAKSTAKANGSPKAASPQREEKPKEENG KPISSKTLADEIKAGIDGGVTAARLSGLLESLTGSGQEKMDALFMALFQGIEKGLSKEVIKKKKYLIAAIASGGDSQLLLIAAIQGFFENSSTVKELPLV LKALYDADVLEEEYIMQWYQKLRASNKESKIVKSAGPFIDWLQNAESESEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36730			Translation initiation factor ...		Lus10004057 [exp]	0	1
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10037241 [exp]	3.2	0.9010
AT1G65980		TPX1	thioredoxin-dependent peroxida...		Lus10023662 [exp]	3.9	0.9015
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10042217 [exp]	8.7	0.8967
AT3G02430			Protein of unknown function (D...		Lus10012734 [exp]	18.5	0.8875
AT1G31910			GHMP kinase family protein (.1...		Lus10012122 [exp]	22.1	0.8947
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	24.8	0.8979
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Lus10006130 [exp]	26.1	0.8583
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Lus10013133 [exp]	26.9	0.8835
AT5G15320			unknown protein		Lus10018064 [exp]	30.3	0.8946
AT2G25670			unknown protein		Lus10017738 [exp]	32.2	0.8835

Compare expression of checked genes

Lus10004057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.