Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01275 244 / 7e-81 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 221 / 7e-72 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G02610 150 / 7e-45 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 149 / 7e-44 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G02960 149 / 7e-44 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT3G47550 146 / 5e-43 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT5G62460 134 / 1e-37 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 129 / 1e-36 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G32670 56 / 9e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G18760 54 / 4e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002282 [exp] 458 / 3e-165 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10034640 [exp] 232 / 1e-75 AT2G01275 202 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10035271 [exp] 229 / 7e-75 AT2G01275 240 / 2e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10013491 [exp] 222 / 3e-69 AT5G13240 299 / 1e-99 transcription regulators (.1) Lus10021670 [exp] 166 / 8e-50 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10012826 [exp] 163 / 6e-49 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10035010 [exp] 161 / 5e-48 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10034454 [exp] 152 / 9e-45 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10019102 [exp] 150 / 8e-44 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G093500 [exp] 351 / 3e-123 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.017G122300 [exp] 318 / 2e-110 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G115600 [exp] 294 / 9e-101 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G127400 [exp] 288 / 2e-98 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G169200 [exp] 166 / 4e-50 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.008G086300 [exp] 160 / 6e-48 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.014G121900 [exp] 154 / 5e-46 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.019G111700 [exp] 138 / 7e-40 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.002G196600 [exp] 137 / 1e-39 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G126600 [exp] 134 / 3e-38 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF12428 [flax] [poplar] DUF3675 Protein of unknown function (DUF3675)
Representative CDS sequence Show only first row Show all	>Lus10004058 pacid=23156724 polypeptide=Lus10004058 locus=Lus10004058.g ID=Lus10004058.BGIv1.0 annot-version=v1.0 ATGGGAGACCATTTTGTTTTGCTGGTGGATAGGTTGCTTACTGAATCTACCCTTGAAGCTGCAATAGAAAGAAAAAACCAGCTGCATCAACCTGCTACAA CATCTTCAAGCAAGGAACTAGCTTATATGTCATCTCCAATGAAACTCGTTGACTGTAGAATTTGCCATGATGAGGATGAGGACACAAACATGGAAGTTCC ATGCTCTTGTAACGGCAGTTTAAAGTATGCTCATAGAAAATGTATTCAGAGATGGTGCAATGAGAAGGGTGATACAATCTGTGAAATTTGCCACCAGCAA TATAAGCATGGTTATACAGCACCTACTCCTTTGTTCCATTATGGAGGTCTTCCCGTGAACATCAGGGGCAACTGGGATATCTCCAGGAATGATTACCTTC ACAATCCTCAGTTCATAGCAATGGTGTCAGATGACCATGAAATATTGGGTTCCGACTTCGATGATTACGCTACTCCATCTCCGAGAAGCCTAATGTGTTG CCGAATAGTGGCCATAATTTTCATGGTCCTTCTGGTTCTGCGCCATACACTTCCAGTCATCATCGCTGGCGCCGAAGACTACTCTTTGACAATGTTCACA TTATTGATGTTGAGAACAATTGGGATTCTTCTGCCGATTTATGTCATGCTTAAAGCATTCACAGCCATCCAGCGTCGTCGGAACCGTTACCAACAGAGCT CACGTATCGGATTGATGCCATCCGATGAAGGGAACGAGCTGCCTCAATTGCAACCTCAGTCTCGGCTTATTAATGTGCGGTAA
AA sequence Show only first row Show all	>Lus10004058 pacid=23156724 polypeptide=Lus10004058 locus=Lus10004058.g ID=Lus10004058.BGIv1.0 annot-version=v1.0 MGDHFVLLVDRLLTESTLEAAIERKNQLHQPATTSSSKELAYMSSPMKLVDCRICHDEDEDTNMEVPCSCNGSLKYAHRKCIQRWCNEKGDTICEICHQQ YKHGYTAPTPLFHYGGLPVNIRGNWDISRNDYLHNPQFIAMVSDDHEILGSDFDDYATPSPRSLMCCRIVAIIFMVLLVLRHTLPVIIAGAEDYSLTMFT LLMLRTIGILLPIYVMLKAFTAIQRRRNRYQQSSRIGLMPSDEGNELPQLQPQSRLINVR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10004058 [exp]	0	1
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10021113 [exp]	2.4	0.7671
AT2G47210	MYB		myb-like transcription factor ...		Lus10021650 [exp]	3.2	0.7644
AT4G03415			Protein phosphatase 2C family ...		Lus10018570 [exp]	7.7	0.7550
AT5G22120			unknown protein		Lus10004788 [exp]	9.2	0.7301
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10026118 [exp]	10.5	0.7141
AT3G63240			DNAse I-like superfamily prote...		Lus10022074 [exp]	13.7	0.7123
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Lus10030591 [exp]	14.7	0.7376
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10014745 [exp]	19.5	0.7512
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10042404 [exp]	21.2	0.7182
AT5G27430			Signal peptidase subunit (.1)		Lus10040138 [exp]	23.9	0.7479

Compare expression of checked genes

Lus10004058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.