Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71090 179 / 3e-51 Auxin efflux carrier family protein (.1) AT5G01990 116 / 3e-28 Auxin efflux carrier family protein (.1) AT5G65980 60 / 2e-09 Auxin efflux carrier family protein (.1) AT2G17500 59 / 3e-09 Auxin efflux carrier family protein (.1.2.3.4) AT1G20925 58 / 6e-09 Auxin efflux carrier family protein (.1) AT1G76520 54 / 2e-07 Auxin efflux carrier family protein (.1.2) AT1G76530 50 / 2e-06 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002280 [exp] 317 / 7e-106 AT1G71090 324 / 9e-109 Auxin efflux carrier family protein (.1) Lus10002281 [exp] 133 / 3e-38 AT1G71090 103 / 1e-27 Auxin efflux carrier family protein (.1) Lus10035610 [exp] 114 / 1e-27 AT5G01990 605 / 0.0 Auxin efflux carrier family protein (.1) Lus10003240 [exp] 114 / 7e-27 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1) Lus10036000 [exp] 110 / 1e-26 AT1G71090 486 / 3e-172 Auxin efflux carrier family protein (.1) Lus10016704 [exp] 110 / 1e-26 AT1G71090 481 / 2e-170 Auxin efflux carrier family protein (.1) Lus10016705 [exp] 71 / 6e-14 AT1G71090 134 / 2e-37 Auxin efflux carrier family protein (.1) Lus10036001 [exp] 67 / 1e-13 AT1G71090 131 / 3e-37 Auxin efflux carrier family protein (.1) Lus10016046 [exp] 70 / 1e-12 AT1G20925 392 / 2e-133 Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G122400 [exp] 227 / 2e-69 AT1G71090 580 / 0.0 Auxin efflux carrier family protein (.1) Potri.010G115200 [exp] 219 / 3e-66 AT1G71090 607 / 0.0 Auxin efflux carrier family protein (.1) Potri.008G127700 [exp] 214 / 1e-64 AT1G71090 660 / 0.0 Auxin efflux carrier family protein (.1) Potri.004G093200 [exp] 209 / 1e-62 AT1G71090 513 / 1e-180 Auxin efflux carrier family protein (.1) Potri.016G141700 [exp] 114 / 1e-27 AT5G01990 622 / 0.0 Auxin efflux carrier family protein (.1) Potri.006G112200 [exp] 99 / 2e-22 AT5G01990 602 / 0.0 Auxin efflux carrier family protein (.1) Potri.001G456400 [exp] 66 / 2e-11 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2) Potri.005G099300 [exp] 65 / 4e-11 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4) Potri.011G145600 [exp] 65 / 4e-11 AT1G76520 368 / 2e-125 Auxin efflux carrier family protein (.1.2) Potri.002G003500 [exp] 57 / 2e-08 AT1G20925 499 / 4e-176 Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10004059 pacid=23156732 polypeptide=Lus10004059 locus=Lus10004059.g ID=Lus10004059.BGIv1.0 annot-version=v1.0 ATGGCGTATCCGATGAGTGACGACAAGCAAGTAAAATCCGCCGGAGAAGAAATCATGGCTTCAATTCTTCCCTTCCTCAAACTCATAACTCTAACCCTCT TCGGGTTAGTCCTTTCCCATCCCAAAATCCAGTTCATCCCTAGACAGACATTCAAGCTGCTCAGCAAGCTCGTCTTCGTACTTTTCCTCCCCTGCTTAAT CTTCACTAACTTAGGCCAATCCGTCACGATTCACAACGTCGTAAATTGGTGGGTCATCCCCGTCAACGTCGTCATCAGCACCGCCGCTGGGTGCATTCTG GGATGCGTAGTCGCTGTCGTCTGCCGTCCACCGCCGCAGTTCTTTCGGTTCACGGTAATCGCCACCGGGTTCGGAAACACCGGGAATATCGCGTACGCTG TTGTCGGGACGATTTGCCGTCGGAGCTCCGGCAACCCGTTTGGACCCGACTGCTACTCGAACGGCGTCGCTTATGCGTCGATTGCGCAGTGGGTGTCGGT GATTCTGGTTTACACTCTGGTTTACCACATGATGGAGCCACCTCTTGAGTATTACGAAGTAATCAACCACGAAGAACAAGAAGAAGAAGACGGGGAATTA GGTGAAATTGGGGAAATCGGCAGCGGCGGAAGAGAGATAATTGAGGTGGTTGAAGATTCCCCCGCCGCGGATTTAAGCCGGCCGTTACTCGACGAAGCAG AGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTGCGGGTGCTACCGCGCGTGGGGATCGGGGTGGTGAA GGCGGCGGAAGGGATGGGGCTGCTGGTGGCCGGAGACCAGCTGTATAAGTTTGTGTTGCTGTTGCAGTACGCGACGCCGAGCGCGATTCTGCTGGGGGCG GTGGCGAACTTGAGAGGGTACGCGGTGAAGGAAGCGTCGGCGTTGCTGTTCTGGCAGCATATTTGTGCAGTGGGGTCTCTTTCTTTGTACATTGTCGTAT TCTTCAAGCTCTTGCTTTCCTACACTTGA
AA sequence Show only first row Show all	>Lus10004059 pacid=23156732 polypeptide=Lus10004059 locus=Lus10004059.g ID=Lus10004059.BGIv1.0 annot-version=v1.0 MAYPMSDDKQVKSAGEEIMASILPFLKLITLTLFGLVLSHPKIQFIPRQTFKLLSKLVFVLFLPCLIFTNLGQSVTIHNVVNWWVIPVNVVISTAAGCIL GCVVAVVCRPPPQFFRFTVIATGFGNTGNIAYAVVGTICRRSSGNPFGPDCYSNGVAYASIAQWVSVILVYTLVYHMMEPPLEYYEVINHEEQEEEDGEL GEIGEIGSGGREIIEVVEDSPAADLSRPLLDEAEWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRVLPRVGIGVVKAAEGMGLLVAGDQLYKFVLLLQYATPSAILLGA VANLRGYAVKEASALLFWQHICAVGSLSLYIVVFFKLLLSYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71090			Auxin efflux carrier family pr...		Lus10004059 [exp]	0	1
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10027368 [exp]	1.7	0.8761
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Lus10003418 [exp]	4.9	0.8121
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10027809 [exp]	5.5	0.8740
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Lus10026895 [exp]	7.1	0.8409
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Lus10027515 [exp]	9.5	0.8302
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10041385 [exp]	10.2	0.8231
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10024857 [exp]	12.0	0.8395
AT3G62060			Pectinacetylesterase family pr...		Lus10009966 [exp]	14.0	0.7991
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Lus10031272 [exp]	15.7	0.8369
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10005039 [exp]	18.7	0.8378

Compare expression of checked genes

Lus10004059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.