Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59310 280 / 3e-93 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) AT3G59340 270 / 4e-89 Eukaryotic protein of unknown function (DUF914) (.1) AT3G59320 244 / 7e-79 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) AT3G59330 155 / 2e-45 Eukaryotic protein of unknown function (DUF914) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003247 [exp] 306 / 3e-103 AT3G59310 256 / 1e-83 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10026744 [exp] 298 / 5e-100 AT3G59310 451 / 4e-160 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10025530 [exp] 272 / 4e-89 AT3G59310 432 / 7e-152 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10002279 [exp] 234 / 6e-76 AT3G59330 111 / 2e-28 Eukaryotic protein of unknown function (DUF914) (.1) Lus10013357 [exp] 46 / 3e-05 AT1G08420 1713 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030800 [exp] 372 / 5e-129 AT3G59310 265 / 7e-87 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Potri.002G230600 [exp] 294 / 5e-98 AT3G59310 436 / 8e-154 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Potri.014G151800 [exp] 287 / 4e-95 AT3G59310 417 / 3e-146 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF06027 [flax] [poplar] SLC35F Solute carrier family 35
Representative CDS sequence Show only first row Show all	>Lus10004060 pacid=23156733 polypeptide=Lus10004060 locus=Lus10004060.g ID=Lus10004060.BGIv1.0 annot-version=v1.0 ATGGAGCTGCAAATGAGCAAATTATGGTGGAGAGTGTGGCTGATTTTCTTGGGTCAGGCCATTTCTTTCTCCCTTGCACTCGCCAGTTTCACTTCTTCCC TCATTGCCTCTCTTGGAGTTGATGCACCTATCTCTCAGAGCACCTTCTGTTACCTCCTCTTGGCATCGGTCTACGGCACCATATTGCTCCGCCGCCGCCG CAAATTGCAGGTCTCCTGGTACTGGTACCTCCTCCTCGGATTCATCGATGTACAGGGCAATTTTCTCGTGAACAAAGCATACCAATTCTCGTCGATAACA AGCGTGACGTTACTGGACTGCTGGACCATACCATGGGTCATAATCCTGACGTGGCTGCTCTTGGGAACCCGCTATTCCTTCCTCCAGCTCCTTGGTTCAG CCGTTTGTGTACTTGGCCTTGCTCTGGTTCTCTTCTCTGATTCCGATGACGGTGGAGGAACTGTAGGTGGGTCAAACCCTCTTCTGGGCGACACACTTGT GATTCTCGGAACCATTTTCTTTGCTTTGAGCAACGTTGGTGAGGAATTTTGTGTGAAGAAAAGAGACAGGGTTGAAGTTGTGGCGATGCTTGGTGTATTT GGTCTCCTTGTCAGCTTGCTTCAGCTATCCGTGTTTGAGATCAATACCCTCAAGTCGGTCAATTGGTCTGTCGATATAGTATTAGCAGTTGCTGGCTTTA CAGTAGCAATCTTTTCATTCTACTCCCTCACTCCCATTGTGCTCAAGTGGAGTGGAGCAACACTGTTCAACCTTTCCATCCTGACTTCTGATATGTGGGC TGTCCTTATTCGCATCTTTTTCTACGGCCAAAAGGTGGATTGGCTATACTTTCTTGCCTTTGCACTGGTGGCCATTGGCTTAATTACTTACTCCATGACT GAGACTGAGGAGGATTCACACACTAAGACAGAATCGAACGGTGAGAATCCGAGTGTTGCAGAGAGCCAGCAACAGCAACCACTACTGTCAGCGTGA
AA sequence Show only first row Show all	>Lus10004060 pacid=23156733 polypeptide=Lus10004060 locus=Lus10004060.g ID=Lus10004060.BGIv1.0 annot-version=v1.0 MELQMSKLWWRVWLIFLGQAISFSLALASFTSSLIASLGVDAPISQSTFCYLLLASVYGTILLRRRRKLQVSWYWYLLLGFIDVQGNFLVNKAYQFSSIT SVTLLDCWTIPWVIILTWLLLGTRYSFLQLLGSAVCVLGLALVLFSDSDDGGGTVGGSNPLLGDTLVILGTIFFALSNVGEEFCVKKRDRVEVVAMLGVF GLLVSLLQLSVFEINTLKSVNWSVDIVLAVAGFTVAIFSFYSLTPIVLKWSGATLFNLSILTSDMWAVLIRIFFYGQKVDWLYFLAFALVAIGLITYSMT ETEEDSHTKTESNGENPSVAESQQQQPLLSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59310			Eukaryotic protein of unknown ...		Lus10004060 [exp]	0	1
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10003854 [exp]	1.7	0.8961
AT4G21870			HSP20-like chaperones superfam...		Lus10018346 [exp]	1.7	0.8387
					Lus10021443 [exp]	3.2	0.8150
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10000143 [exp]	4.5	0.8770
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10002089 [exp]	5.7	0.8284
AT5G57670			Protein kinase superfamily pro...		Lus10019990 [exp]	16.0	0.7922
AT5G27260			unknown protein		Lus10035759 [exp]	16.7	0.7245
AT3G05880		RCI2A	RARE-COLD-INDUCIBLE 2A, Low te...		Lus10014028 [exp]	22.3	0.7674
AT5G01790			unknown protein		Lus10030550 [exp]	23.6	0.7703
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022133 [exp]	25.5	0.7512

Compare expression of checked genes

Lus10004060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.