Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01950 701 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 691 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G37450 685 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 470 / 4e-153 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 352 / 3e-106 Leucine-rich repeat protein kinase family protein (.1) AT5G49760 345 / 8e-104 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 342 / 9e-103 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 318 / 5e-95 Leucine-rich repeat protein kinase family protein (.1) AT3G24550 212 / 2e-58 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G49100 211 / 1e-56 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002278 [exp] 1484 / 0 AT5G37450 722 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 707 / 0 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 698 / 0 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 677 / 0 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035605 [exp] 665 / 0 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012159 [exp] 351 / 2e-105 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 268 / 3e-76 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 256 / 1e-75 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 243 / 7e-72 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G140101 [exp] 828 / 0 AT1G06840 1001 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140300 [exp] 711 / 0 AT5G01950 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G111100 [exp] 707 / 0 AT5G01950 1052 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140200 [exp] 701 / 0 AT5G01950 1018 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131800 [exp] 694 / 0 AT1G06840 1092 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G159200 [exp] 682 / 0 AT1G06840 1040 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G159500 [exp] 659 / 0 AT1G06840 1102 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 347 / 2e-104 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G144100 [exp] 341 / 2e-102 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 338 / 2e-101 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004061 pacid=23156711 polypeptide=Lus10004061 locus=Lus10004061.g ID=Lus10004061.BGIv1.0 annot-version=v1.0 ATGGCTCATCCCTTCTATCTTCATCCATTTTCAGCGGACATGAAGAGACGGCAGAGTTTGTTTCCTCTGTTTGGCCCATTGGTTGTATTGTTCATTGTTA CTATTTTCTCATTTCCTCTGCTTGGTTCAGGACAGGTGCTTCATCCTTTGGAAGTGACTGCTCTTAATGCTGTCAGGACTAGTCTCAATGATCCGAAGAA TTATCTGCGCAATTGGCAGGGAATTGATCCTTGCGCCTTGAACTGGACTGGTGTCATTTGCTCTCCAAGTGCAGATGATGGTTACCTCCACGTCCGCGAA TTAAATTTCATGTGGAACAGCATAAGTGGCAGCATCCCAAAGGAGATTGGCGATTTGAACTACCTGAAGATTCTGATGGTGAGTGGAAACCAGATCTCAG GTCCATTACCGGATGAGCTAGGATTTCTCCCTAACTTAACCAAATTCCAATTGGACCTGAATCAAATATCAGGACCCATACCGAAAACATTTGGCAATCT TAAAAAAGTCCAGCACTTCCATATGAATAACAACTCATTCAGTGGCCAGCTTCCCTCAGAGCTTTATAATCTATCTGTACTGGTGCATTTGCAACTCAAC AATAACAACTTCAGTGGAACACAGATTCCAGATTCATATGCCAATATGTCCAAGCTTCTGAAATTGAGTCTAAGGAACTGTAATTTGGAAGGGCCTGTTC CAGATCTAAGCTCTATACCTCGCCTTTATTACTTGTCGCTAGAGAACAATAGCTTGAATGGTAGTGTTCCTTCCAACATCTGGCAGAATGAGAATTTCAG TTCAGAGGCAAAACTTACATTGGACTTCCGGAACAATTCCCTTTCAGATATTTCATCCCTTCTTGCCCCACCTTTGAATGTTAGCATCAGGCTCCAAGGG AATCCTATATGTACAAGGACAGACGTTTCGATGAACATGGATCAGTTCTGCAGGGCGGCAACAACAGCAATGGTTGATGTCGAGCCTCCTAAAATATCAA ACGGAACAGTAGAAGGATGCATGCCACAGTCGTGTCCAAGCAGTGGTGGGTATGAGTATTTCCCAGCAGCACTTCTACCCTGTCAATGTGTTGCTCCTTT AGGGGTAGGGATGCGGTTGAGGAGTCCTAGCATAACAGATTTCCGTCCCTACCGAGGCTACTTCAACCAATATATGACTGGCAACCTCAGCGTGGCACCG TACCAGCTAGTTGTGGATTCCTTCGTATGGGAAGAAGGTCCCAGACTCCGAATGTTGCTCAAAATTTTCCCTCCACACAATGATACTGATTTCAATTTAA CCGAGACTGTGCGGCTCCAGAACATGTTTTTCAACTTTGAGATCGTTGGAGATGACACGTTTGGACCCTATGATCTACTCAGCTTCACATTACGTGGAAA TGCTGTTATATTCAATCCTCCACCAAAGGGAGGAGCTGGGAGCAAAGGTTCTAAGGTAGGGATCATATTAGGGGCAATCTCTTGTGCAATTGCTATAGCA GTTGGTATTGTAGTTGTTTTCCATTGTAAGCGCTCAAGAAAACAACAGAAGCAAGTTCAAGCTGGACAAAAACCAATACCAAAGATAGGACTGAAGATTG AAGGAGTGAAGGAGTTTTGTTTCGAGGAGCTGGAGAAGGCAACGAATGGGTTCACCAGTAATACTCAAATTGGACAAGGTGGGTACGGGAAAGTTTACAA AGGTGTTTTGGGGGAGGAAACTTTGGTGGCGATTAAGCGTGCTAGGCAAGGTTCGCTGACTAGCGAGAAAGAGTTCTACACCGAGATAGAGCTCCTCTCG AGGGTTCACCATTGCAACTTAGTGTCCTTGCTTGGCTATTGTGATGAATCAGCGGAGCAAATGCTGGTGTACGAGTACATGCCGAATGGTTCTGTTCAAG ACCTTCTTTCTGGGAGGTACGAGAAAGCTGTTAGCTTGGGGACAAGGGTGAACATCGCGCTAGGTGCGGCCAAGGGGATTCTCTATCTCCATGCGGAAGC AGACCCGCCAATCATCCACAGAGATATCAAGGCAAACAACATCCTCTTGGATTCGAAACTCACACCTAAAGTCTCTGACTTCGGCATCTCCAGGCTTGTC CCTAAAACAACAACAACAACATCATCATCACTCGACAACCCGAATGATGATTATAAATATGAATCACACGGGGAAGGAAGTTCATCAGCACCCATTTCCA CAGCCGTCAAAGGAACCCCTGGATACGTGGACCCAGAGTACTTCAGAAGCCACAAGCTAACAGAGAAAAGCGACGTATACAGCCTAGGGATAGTGTTACT AGAGCTGGTAACTGGGATGCAACCAATCTCCCACGGCAAGAACATAGTGAGGGAAGTGTCTTTAGCTTGGGAGACTGGGATGGTGGAGGCAGTGGTGGAC ACAACTCTACAGAGACCACCATCATCATACTCCAAAGGTCACGCCCACAAATTCATGGGATTGGGCCTCAGGTGCTGCCACGACGAGGCCAAGTTCCGCC CTACCATGGCAGAAGTGGTTAGGGAGCTGGAGGATCTCTGCTCATCGATCGGATCATCAGCTGGGCCAAGAGCTCAATCTGGGGAGCTTGCCGGTGCTCC GGAAGCAGGGAAATGGAGGAGCTATGGGGTGATGGAGCTGGAGCGATCCGGCAATAGCAGTACCGGTGATAGTGTCAAAGCGAGTAGCAGCGGTGACACG TTAACGTTCATGTCGTCTGCCGGGTTCAGGGGGAGTGACCTTGTTAGTGGCGTCATCCCCACCATTCGACCTCGTTGA
AA sequence Show only first row Show all	>Lus10004061 pacid=23156711 polypeptide=Lus10004061 locus=Lus10004061.g ID=Lus10004061.BGIv1.0 annot-version=v1.0 MAHPFYLHPFSADMKRRQSLFPLFGPLVVLFIVTIFSFPLLGSGQVLHPLEVTALNAVRTSLNDPKNYLRNWQGIDPCALNWTGVICSPSADDGYLHVRE LNFMWNSISGSIPKEIGDLNYLKILMVSGNQISGPLPDELGFLPNLTKFQLDLNQISGPIPKTFGNLKKVQHFHMNNNSFSGQLPSELYNLSVLVHLQLN NNNFSGTQIPDSYANMSKLLKLSLRNCNLEGPVPDLSSIPRLYYLSLENNSLNGSVPSNIWQNENFSSEAKLTLDFRNNSLSDISSLLAPPLNVSIRLQG NPICTRTDVSMNMDQFCRAATTAMVDVEPPKISNGTVEGCMPQSCPSSGGYEYFPAALLPCQCVAPLGVGMRLRSPSITDFRPYRGYFNQYMTGNLSVAP YQLVVDSFVWEEGPRLRMLLKIFPPHNDTDFNLTETVRLQNMFFNFEIVGDDTFGPYDLLSFTLRGNAVIFNPPPKGGAGSKGSKVGIILGAISCAIAIA VGIVVVFHCKRSRKQQKQVQAGQKPIPKIGLKIEGVKEFCFEELEKATNGFTSNTQIGQGGYGKVYKGVLGEETLVAIKRARQGSLTSEKEFYTEIELLS RVHHCNLVSLLGYCDESAEQMLVYEYMPNGSVQDLLSGRYEKAVSLGTRVNIALGAAKGILYLHAEADPPIIHRDIKANNILLDSKLTPKVSDFGISRLV PKTTTTTSSSLDNPNDDYKYESHGEGSSSAPISTAVKGTPGYVDPEYFRSHKLTEKSDVYSLGIVLLELVTGMQPISHGKNIVREVSLAWETGMVEAVVD TTLQRPPSSYSKGHAHKFMGLGLRCCHDEAKFRPTMAEVVRELEDLCSSIGSSAGPRAQSGELAGAPEAGKWRSYGVMELERSGNSSTGDSVKASSSGDT LTFMSSAGFRGSDLVSGVIPTIRPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01950			Leucine-rich repeat protein ki...		Lus10004061 [exp]	0	1
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10032487 [exp]	10.0	0.7287
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10002139 [exp]	10.6	0.7834
AT3G17670			tetratricopeptide repeat (TPR)...		Lus10007446 [exp]	26.8	0.7286
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10020520 [exp]	33.0	0.6979
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015103 [exp]	42.4	0.7024
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10032137 [exp]	48.2	0.6881
AT5G10960			Polynucleotidyl transferase, r...		Lus10029710 [exp]	49.9	0.6673
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10008755 [exp]	53.4	0.6822
AT1G17450			B-block binding subunit of TFI...		Lus10015660 [exp]	54.6	0.6763
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009643 [exp]	63.7	0.6539

Compare expression of checked genes

Lus10004061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.