Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01300 87 / 3e-22 unknown protein AT1G15010 81 / 5e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002277 [exp] 259 / 5e-90 AT2G01300 95 / 3e-25 unknown protein Lus10004069 [exp] 56 / 2e-10 AT2G01300 114 / 2e-33 unknown protein Lus10009104 [exp] 52 / 2e-08 AT2G01300 127 / 5e-38 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G093100 [exp] 96 / 1e-25 AT2G01300 113 / 7e-33 unknown protein Potri.004G093000 [exp] 94 / 3e-25 AT2G01300 107 / 2e-30 unknown protein Potri.008G127800 [exp] 89 / 7e-23 AT2G01300 150 / 4e-47 unknown protein Potri.010G115100 [exp] 78 / 1e-18 AT2G01300 102 / 3e-28 unknown protein Potri.004G092800 [exp] 48 / 3e-07 AT2G01300 122 / 2e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004062 pacid=23156740 polypeptide=Lus10004062 locus=Lus10004062.g ID=Lus10004062.BGIv1.0 annot-version=v1.0 ATGGAACTAGCATCTGCAGCTTCTCACAACTTCCCAATCTCCGGCAATCAACATCAACATCTTCATCTGCCGTCGCGGTGCCGCAGTCGTCGCGGTGGTC CAGCCATCCTGGCCTACAAGGGACCACCACCAAACGTGGGCCGTGGCGGTGGGTCGGATCACGATGATGAAGGGAGGGTGGTGGAGGAGAACATGGTGGT GCTGAGGATGAGGATAAGGGAGCTGAAGGCGGCGGAGAGATGGGACAACCCGCCGTCAAACTGGATGGAATGGGAGAAGCGTTACTACGCTCACAACGCT TACGGGTCCCACGTCTGCCACGTGGCCGGTTTGCTTCAGAACCGGCTGATGGATTCCCGCCCTAGCTTGGCTATGGGAGTGGCGGCGCTGGTTCTGTTCA GCTTGCTGTTCTCCGCCGGCATGGTATTGGTTTGTGGTGTTGGGATTGTCAGGGGTATTGTTGACTTTGTCTCTTGGCTTTTTTTCCTAAATTGGTGA
AA sequence Show only first row Show all	>Lus10004062 pacid=23156740 polypeptide=Lus10004062 locus=Lus10004062.g ID=Lus10004062.BGIv1.0 annot-version=v1.0 MELASAASHNFPISGNQHQHLHLPSRCRSRRGGPAILAYKGPPPNVGRGGGSDHDDEGRVVEENMVVLRMRIRELKAAERWDNPPSNWMEWEKRYYAHNA YGSHVCHVAGLLQNRLMDSRPSLAMGVAALVLFSLLFSAGMVLVCGVGIVRGIVDFVSWLFFLNW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01300			unknown protein		Lus10004062 [exp]	0	1
AT3G14250			RING/U-box superfamily protein...		Lus10024093 [exp]	1.7	0.9551
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10042078 [exp]	3.7	0.9449
AT2G14095			unknown protein		Lus10035649 [exp]	3.9	0.9446
AT3G02430			Protein of unknown function (D...		Lus10036581 [exp]	5.2	0.9216
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10020024 [exp]	5.7	0.9387
AT1G53210			sodium/calcium exchanger famil...		Lus10033629 [exp]	6.0	0.9306
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037661 [exp]	6.6	0.9201
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10018083 [exp]	8.4	0.9214
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	8.4	0.9341
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10029469 [exp]	8.7	0.8977

Compare expression of checked genes

Lus10004062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.