Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68630 133 / 2e-40 PLAC8 family protein (.1) AT1G58320 124 / 4e-37 PLAC8 family protein (.1) AT5G35525 122 / 2e-36 PLAC8 family protein (.1) AT1G14870 119 / 2e-35 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1) AT1G14880 114 / 2e-33 AtPCR1, PCR1 PLANT CADMIUM RESISTANCE 1 (.1) AT3G18450 110 / 1e-31 PLAC8 family protein (.1) AT3G18460 107 / 2e-30 PLAC8 family protein (.1) AT3G18470 105 / 4e-30 PLAC8 family protein (.1) AT1G49030 105 / 3e-29 PLAC8 family protein (.1) AT1G52200 95 / 2e-25 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004064 [exp] 227 / 1e-71 AT4G30040 156 / 3e-41 Eukaryotic aspartyl protease family protein (.1) Lus10008890 [exp] 196 / 8e-66 AT1G68630 119 / 6e-35 PLAC8 family protein (.1) Lus10009036 [exp] 187 / 2e-62 AT1G68630 122 / 2e-36 PLAC8 family protein (.1) Lus10021696 [exp] 120 / 3e-35 AT1G14870 177 / 5e-57 PLANT CADMIUM RESISTANCE 2 (.1) Lus10034298 [exp] 115 / 2e-33 AT1G14870 160 / 7e-51 PLANT CADMIUM RESISTANCE 2 (.1) Lus10043325 [exp] 103 / 2e-28 AT1G14870 187 / 4e-61 PLANT CADMIUM RESISTANCE 2 (.1) Lus10019478 [exp] 100 / 4e-27 AT1G14870 184 / 7e-60 PLANT CADMIUM RESISTANCE 2 (.1) Lus10041474 [exp] 82 / 2e-20 AT1G14870 112 / 3e-32 PLANT CADMIUM RESISTANCE 2 (.1) Lus10005257 [exp] 81 / 1e-19 AT2G40935 228 / 6e-77 PLAC8 family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G092200 [exp] 133 / 2e-40 AT1G14870 164 / 2e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.007G042800 [exp] 128 / 1e-38 AT1G14870 152 / 7e-48 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G109100 [exp] 124 / 7e-37 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132850 [exp] 122 / 9e-36 AT1G14870 184 / 6e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108800 [exp] 120 / 3e-35 AT1G14870 179 / 8e-58 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G127800 [exp] 119 / 3e-35 AT1G68630 151 / 1e-47 PLAC8 family protein (.1) Potri.008G132775 [exp] 119 / 1e-34 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108900 [exp] 118 / 3e-34 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132900 [exp] 117 / 5e-34 AT1G14870 189 / 7e-62 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G127700 [exp] 113 / 2e-32 AT1G68610 174 / 5e-56 PLANT CADMIUM RESISTANCE 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10004063 pacid=23156731 polypeptide=Lus10004063 locus=Lus10004063.g ID=Lus10004063.BGIv1.0 annot-version=v1.0 ATGAATCAACCCAACATCACCCCCGGCCAATGGACCACTGGCCTCTGCGACTGCTGTGAAGATCCCGGCAGCTGCATCAAAACAACCTGCTGCCCGTGCA TTACCTTCGGCCAGAATACTGTGATCCTCGACAAAAATGGTTCATCTTGCTTCGGATCGGGACTAGTGTTCTGCATGCTGGCACAAATAGGCATAAGTTG CCTATACTCGTACCCATACCGCTACAAGCTGAGAGAACAGTACAAATTGCCAGAAAATCCCTGTGGGGATTGCATGCTGCATTGGTGTTGTGGGCCGTGT GCTATCTGCCAGGAGTATCGTGAGCTTAAGAACCGAGGCCTAAATCCTTCCAAGGGATGGGAAGGTACTGCTATGGCCGCGCCAGTTGTTGCTTCTGGAA TGCCTCGTACTTAA
AA sequence Show only first row Show all	>Lus10004063 pacid=23156731 polypeptide=Lus10004063 locus=Lus10004063.g ID=Lus10004063.BGIv1.0 annot-version=v1.0 MNQPNITPGQWTTGLCDCCEDPGSCIKTTCCPCITFGQNTVILDKNGSSCFGSGLVFCMLAQIGISCLYSYPYRYKLREQYKLPENPCGDCMLHWCCGPC AICQEYRELKNRGLNPSKGWEGTAMAAPVVASGMPRT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68630			PLAC8 family protein (.1)		Lus10004063 [exp]	0	1
AT4G33070			Thiamine pyrophosphate depende...		Lus10015291 [exp]	15.8	0.8754
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10010506 [exp]	23.2	0.8744
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10010870 [exp]	27.7	0.8685
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10010936 [exp]	30.3	0.8646
					Lus10003802 [exp]	37.5	0.8612
AT5G44390			FAD-binding Berberine family p...		Lus10008410 [exp]	39.2	0.8466
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Lus10021365 [exp]	47.8	0.8565
AT1G20950			Phosphofructokinase family pro...		Lus10016047 [exp]	55.1	0.8310
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Lus10008579 [exp]	65.6	0.8156
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10041190 [exp]	67.9	0.8257

Compare expression of checked genes

Lus10004063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.