Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30040 156 / 2e-41 Eukaryotic aspartyl protease family protein (.1) AT2G23945 152 / 9e-40 Eukaryotic aspartyl protease family protein (.1) AT4G30030 144 / 4e-37 Eukaryotic aspartyl protease family protein (.1) AT3G25700 120 / 7e-29 Eukaryotic aspartyl protease family protein (.1.2) AT1G68630 110 / 7e-28 PLAC8 family protein (.1) AT1G58320 106 / 1e-26 PLAC8 family protein (.1) AT5G35525 105 / 2e-26 PLAC8 family protein (.1) AT4G12920 111 / 3e-26 UND UNDEAD, Eukaryotic aspartyl protease family protein (.1) AT1G14870 100 / 2e-24 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1) AT3G18470 95 / 6e-23 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002276 [exp] 447 / 1e-151 AT2G23945 206 / 2e-61 Eukaryotic aspartyl protease family protein (.1) Lus10002275 [exp] 390 / 9e-130 AT2G23945 164 / 7e-46 Eukaryotic aspartyl protease family protein (.1) Lus10015486 [exp] 302 / 4e-94 AT2G23945 248 / 3e-76 Eukaryotic aspartyl protease family protein (.1) Lus10023451 [exp] 238 / 4e-71 AT2G23945 232 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10004063 [exp] 226 / 1e-70 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10011615 [exp] 231 / 2e-68 AT2G23945 224 / 5e-68 Eukaryotic aspartyl protease family protein (.1) Lus10031449 [exp] 219 / 8e-64 AT2G23945 219 / 3e-66 Eukaryotic aspartyl protease family protein (.1) Lus10031450 [exp] 212 / 2e-61 AT4G30030 231 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10008890 [exp] 174 / 4e-51 AT1G68630 119 / 6e-35 PLAC8 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179500 [exp] 167 / 6e-45 AT2G23945 412 / 3e-141 Eukaryotic aspartyl protease family protein (.1) Potri.012G092200 [exp] 111 / 3e-28 AT1G14870 164 / 2e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.018G106500 [exp] 115 / 2e-27 AT4G30030 150 / 2e-41 Eukaryotic aspartyl protease family protein (.1) Potri.010G109100 [exp] 109 / 4e-27 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108800 [exp] 107 / 2e-26 AT1G14870 179 / 8e-58 PLANT CADMIUM RESISTANCE 2 (.1) Potri.007G042800 [exp] 104 / 8e-26 AT1G14870 152 / 7e-48 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132850 [exp] 104 / 1e-25 AT1G14870 184 / 6e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132900 [exp] 103 / 4e-25 AT1G14870 189 / 7e-62 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132775 [exp] 103 / 5e-25 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108900 [exp] 99 / 1e-23 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease CL0129 [flax] [poplar] PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10004064 pacid=23156745 polypeptide=Lus10004064 locus=Lus10004064.g ID=Lus10004064.BGIv1.0 annot-version=v1.0 ATGGACACGGGCAGCAACCTTTTGTGGGTTAGGTGCCCACCTTGTACTCATTGCTCCTCCCTGTCGGGAGTTACCTACTTTTACACGTGGCACTCCAAGA CTTACTCTCCGCTCCCGTGTAAAGAAAACTGCGCAATGTGCACTCCTGCGGCACCATGGCCTAAGCCTCCAGATAGGAAATGCATGTTCAAAGTAGACTA CTTCAACGCACAAAGTACGGGAGTTTACGCCACCGAGCAACTGACCTTTCGGACAAACAACGACGACATGAAGACGACTGTCGTGCCAAATGTGTTGTTC GGGTGCACTGAGACGGAGACCGGAAACAACGACATTGACCCATCTGCCAACGGAATTATGGGGTTGGGGAGAGGATTTGGAACTAGGCCTGAAGACAGCG ACAATTTGATCTACCGGTTGGGCGGAAAATTCTCCTACTGCATCGGCAGCACCTCCAACCGCTCTTACCCTCACAACCGCTTGTCTTTCGGTGATGCCGC TCGCTTCATCGGAAAATTCACTGTCTTAATTTACTCTTCGTCGGGCTATTACTTCACGAACCTCGAGTACATCAGCGTTGGAGCCGGCAAGAAACTGAAC ATAGACTATGACGCATTCAATCATGGAACTGTGATAGATAGTGGGTCTGAAATCAGCTTCCTCCGCCCGCAAGCCATCGACGCGGTGCAGGAAGAGATTA GAGTGGAGGCTGCGTTGATGAATGTCGATGAAGTTCGTTCGCCACTGAAGACGTTGGAGCTCTGCTACAGAGGAAAAGTTGACAAAGAAGGGAGAAGGTT TAATAGTTTTGGCTTTCACTTCGTCGATGGCGCAGAGTTGGAGGTGGATCGTTTCGGCATGTTCCTGCAAGTCTCCGACGATATTTTCTGCCTGGCTATT GCAAGGTCGAAAACTTTTAATATTATTGGGGTCAATGCTCAGCAGGGTTATAATGTTGGCTACCAATTGGGTAAAGACATTAATTTGTTGTACTTTCAGA AGTCAGACAGAGATTGGGAGCGATTTCGTCGATCTATATGCCAACGGAATTATGGGGTTAGGGAAAGGATTTGGAAGTGCGCCCGAATATCGTGCCCCTT TCGTCAACCGATTGGGCGGGCAAATTCTCCTACTGCGTCGGCAGCACCTCCAACCGCCCTTATCCTCACAATCGCTCAGTCTTTCGGCGACGCAGCTCAG TTCCTCAGCAAATCCACTCCCTTAGTTCACACCATCGAGGGCTATTACTTCCTGAACATCAACAACATCAGCATCGGAGGCGACACGATTTTGAACATAG ACACGGACGCATTCAATCACGGAACACTGATAGACAGTGGGACCGAACTTACCCTACTCCGCCCTGAAGCTATCGACGCGGTGAAGGCAGAGGTTAAATT GGAGGCCGAGTTGTTGAATGTCCACGAAGTTCGTTCTCCGGTGAAGGGGTTGGAGCTTTGCTTTAGAGGAACCATTGACAAAGAAGGAAATGCGTTTAAT TATTTTGTCTTTCACTTCGATGGCGGAGCAGAGTTGATGGTGGGTAATTTCAACATATTCTGGCAAGTTGCCGATGACATTTTCTGCCTGGCTATTGTGA GGTCGAACAATCATAATGTTGTTGGGATGATTGCTCAGCAGGGTTATAATGTTGGGTACGACATGGATAGATCCACTAATTTGCTGTACTTTCAGAAGGC GAATGGACCACCGGCCTCTGCGACTGCTGTGAAGATCCCGGCAGCTATAGGCATCAAAACATCCTGCTGCCCCTGCATTACCTTCGGCCAGAATGCTGTG ATCCTCGACAAAAACGGTTCATCTTGCTTTGGATCGGGGCTAGTGTTCTGCATGCTGGCACAAATAGGCATAGGTTGCTTATACTCGTACCCATACCGCT ACAAGCTGAGAGAACAGTACAAACTGCCGGAGAACCCATGTGGGGATTGCATGTTGCATTGGTGTTGTGCGCCGTGTGCTATCTGCCAGGAGTATCGTGA GCTTAAGAACCGTGGCCTGAACCCTTCCAAAGGATGGGAAGCTGCTTCTACCACTATGGCAGCGCCAGTCGTTGCTTCGGGGATGCCTCGTACTTAA
AA sequence Show only first row Show all	>Lus10004064 pacid=23156745 polypeptide=Lus10004064 locus=Lus10004064.g ID=Lus10004064.BGIv1.0 annot-version=v1.0 MDTGSNLLWVRCPPCTHCSSLSGVTYFYTWHSKTYSPLPCKENCAMCTPAAPWPKPPDRKCMFKVDYFNAQSTGVYATEQLTFRTNNDDMKTTVVPNVLF GCTETETGNNDIDPSANGIMGLGRGFGTRPEDSDNLIYRLGGKFSYCIGSTSNRSYPHNRLSFGDAARFIGKFTVLIYSSSGYYFTNLEYISVGAGKKLN IDYDAFNHGTVIDSGSEISFLRPQAIDAVQEEIRVEAALMNVDEVRSPLKTLELCYRGKVDKEGRRFNSFGFHFVDGAELEVDRFGMFLQVSDDIFCLAI ARSKTFNIIGVNAQQGYNVGYQLGKDINLLYFQKSDRDWERFRRSICQRNYGVRERIWKCARISCPFRQPIGRANSPTASAAPPTALILTIAQSFGDAAQ FLSKSTPLVHTIEGYYFLNINNISIGGDTILNIDTDAFNHGTLIDSGTELTLLRPEAIDAVKAEVKLEAELLNVHEVRSPVKGLELCFRGTIDKEGNAFN YFVFHFDGGAELMVGNFNIFWQVADDIFCLAIVRSNNHNVVGMIAQQGYNVGYDMDRSTNLLYFQKANGPPASATAVKIPAAIGIKTSCCPCITFGQNAV ILDKNGSSCFGSGLVFCMLAQIGIGCLYSYPYRYKLREQYKLPENPCGDCMLHWCCAPCAICQEYRELKNRGLNPSKGWEAASTTMAAPVVASGMPRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30040			Eukaryotic aspartyl protease f...		Lus10004064 [exp]	0	1
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10016413 [exp]	2.0	0.9018
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10019707 [exp]	6.6	0.8800
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10016324 [exp]	14.9	0.8182
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10029520 [exp]	15.3	0.8469
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10038370 [exp]	18.2	0.8502
AT1G71930	NAC	VND7, ANAC030	Arabidopsis NAC domain contain...		Lus10017915 [exp]	18.6	0.6790
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10018898 [exp]	24.8	0.8043
AT2G43630			unknown protein		Lus10002105 [exp]	26.2	0.8481
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10002198 [exp]	27.0	0.8370
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10031281 [exp]	30.0	0.8482

Compare expression of checked genes

Lus10004064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.