Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004065 pacid=23156710 polypeptide=Lus10004065 locus=Lus10004065.g ID=Lus10004065.BGIv1.0 annot-version=v1.0 ATGGCAGCTCCATCGAGCTCAATCAGATCTCATCTTTCAAGCTCCGATCGCCTTCGCAACGCTCCGACGCCGGCAGCGGCGATGTCCGTGCCTCCTGATT CGCTTCCAATTTCGGTGCCTCCGTCGCCATCTGTGAGCTCCCGTTCTCCACCATTTCCTCCGACACGAAGATTCGACAGCAGCTTCAACGATATGAATAT ATCTAGCAGTAGAAGTGGTTTTGGAACTGGTTTTGGGTTTGGGTTGACCACTAATGTTGACTCGTTCCAACAAGTCAAAAGGTATGTTCTCAATCTTGAG GTGCTAGTCGTATGA
AA sequence Show only first row Show all	>Lus10004065 pacid=23156710 polypeptide=Lus10004065 locus=Lus10004065.g ID=Lus10004065.BGIv1.0 annot-version=v1.0 MAAPSSSIRSHLSSSDRLRNAPTPAAAMSVPPDSLPISVPPSPSVSSRSPPFPPTRRFDSSFNDMNISSSRSGFGTGFGFGLTTNVDSFQQVKRYVLNLE VLVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004065 [exp]	0	1
AT5G08560			transducin family protein / WD...		Lus10001412 [exp]	4.2	0.8115
AT5G55840			Pentatricopeptide repeat (PPR)...		Lus10038697 [exp]	4.6	0.7498
AT2G34930			disease resistance family prot...		Lus10039523 [exp]	13.9	0.7267
AT5G46060			Protein of unknown function, D...		Lus10005267 [exp]	15.1	0.7820
AT4G14180		ATPRD1	putative recombination initiat...		Lus10003912 [exp]	19.4	0.7722
AT2G34930			disease resistance family prot...		Lus10039522 [exp]	22.7	0.7152
AT4G33590			unknown protein		Lus10036463 [exp]	39.6	0.7547
					Lus10029790 [exp]	44.4	0.7727
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10002642 [exp]	55.7	0.7136
AT3G09410			Pectinacetylesterase family pr...		Lus10025347 [exp]	74.6	0.7325

Compare expression of checked genes

Lus10004065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.