Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58760 163 / 1e-45 Integrin-linked protein kinase family (.1) AT4G18950 159 / 3e-44 Integrin-linked protein kinase family (.1) AT2G31800 156 / 5e-43 Integrin-linked protein kinase family (.1) AT3G59830 153 / 8e-42 Integrin-linked protein kinase family (.1) AT2G43850 149 / 2e-40 Integrin-linked protein kinase family (.1.2) AT1G14000 139 / 5e-37 VIK VH1-interacting kinase (.1) AT5G58950 100 / 6e-23 Protein kinase superfamily protein (.1) AT5G49470 96 / 1e-21 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT4G23050 94 / 2e-20 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G46930 93 / 2e-20 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030387 [exp] 196 / 2e-58 AT3G58760 315 / 2e-103 Integrin-linked protein kinase family (.1) Lus10037851 [exp] 187 / 4e-55 AT3G58760 305 / 2e-99 Integrin-linked protein kinase family (.1) Lus10029277 [exp] 138 / 3e-36 AT4G18950 601 / 0.0 Integrin-linked protein kinase family (.1) Lus10008350 [exp] 132 / 1e-33 AT2G31800 753 / 0.0 Integrin-linked protein kinase family (.1) Lus10030435 [exp] 129 / 3e-33 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10026626 [exp] 128 / 6e-33 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10040540 [exp] 103 / 1e-23 AT3G06620 858 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Lus10027107 [exp] 100 / 7e-23 AT2G31800 709 / 0.0 Integrin-linked protein kinase family (.1) Lus10016912 [exp] 99 / 5e-22 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G123100 [exp] 454 / 1e-159 AT4G18950 235 / 5e-73 Integrin-linked protein kinase family (.1) Potri.002G158950 [exp] 189 / 4e-56 AT4G18950 305 / 1e-99 Integrin-linked protein kinase family (.1) Potri.017G007800 [exp] 154 / 3e-42 AT2G31800 751 / 0.0 Integrin-linked protein kinase family (.1) Potri.007G142100 [exp] 151 / 5e-41 AT2G43850 726 / 0.0 Integrin-linked protein kinase family (.1.2) Potri.004G064400 [exp] 144 / 7e-39 AT4G18950 632 / 0.0 Integrin-linked protein kinase family (.1) Potri.010G164500 [exp] 133 / 8e-35 AT1G14000 757 / 0.0 VH1-interacting kinase (.1) Potri.008G090800 [exp] 127 / 1e-32 AT1G14000 743 / 0.0 VH1-interacting kinase (.1) Potri.003G122700 [exp] 99 / 3e-22 AT4G23050 606 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Potri.008G105100 [exp] 98 / 5e-22 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) Potri.010G146000 [exp] 94 / 1e-20 AT3G06620 953 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10004066 pacid=23156737 polypeptide=Lus10004066 locus=Lus10004066.g ID=Lus10004066.BGIv1.0 annot-version=v1.0 ATGAAAACTAGTTTGCACATAGACGAGGATGCTCAGGAGCAGCTGGAAAATCGTGGAAATAACTACGACATGATTAATCATCATCGTCATCAGGGAAATA ATAATTACGACATGCAAGTGATTGGGAGGTTTCTGAGCTACGCTTCGAGAGGAGACAGAGTCGGACTGAACATGATGCTACGTGAAGAGGGCACTTCTCC CGATGTCCAAGACTACGACCAGCGCACAGCCATGCATCTCGCTGCGAGCGAAGGCCACGCTCCCATCGTTGAGCTTCTTCTCCTATACAAAGCTAACCTC AACCTCAAAGACCGGTGGCAGAGGACGACGGTACGCCATGATCAGGATTTCAACGAAGTGAAATTCGACATTTCGGAATTGGATACTCAACAAGTATCGA AAGTTGTTCAGGGTGTTATGGGAGAATCAATGAAGGTAAAATGGCGAGGAACTTGGGTGGTCAAAACAGTCATTAAAAGTCAAATACGTCAACCAGTCAA AATAAAATTACTATCTGCAAAAGATGACACGTTGTTAAGAGAGCTTCGACATCCCAATATCCTGCAATTTCTGGGCTCGATTGTGGACGAGGAACAAGTC ATTCTCATCACTGAACACCTACCAAAGGGGAACTTGGATAGTATATTGGCGGAAAAAATACGACTCGACCTACCAATTGCCATCCGTTTTGCACTTGACA TTGCTAGGGGAATGAATTATCTTCATGAGCATAAACCAATGCCAATAGTTCACAATCACTTGGACCTGAGGAATTTGTTGCAAGATGGAGGTGGACACTT GAAGATAGGCGAATACTGGGTTCAAATGCTGTATGAACAAGGCCAGCCAAATCAAAGCAATGGTTACAACGCAAGAACAATCCAAGCCAACATTCACAGT ACTGACAACGACATATCCCAATTTGGATTCATCTTCTACCAGATGCTAGAAGGAAAACAATCGACCACCAGCACAGAGAGCCTTAACGTCGGTGATTTTG AACTTAATTTTTCACTCAGCCGTTGTCCGCAAAGGATTAAACAATTGATAGAGCGATGCGTGATGAGTAAGAATCGAAAAGAGAGGCCCTCGTTTGCTGG CATCATAGAGACGCTGGAAGAAGTCTCTGCTTATGTCAAGAAAGTTGCCTGCCCTGTTTGCTGA
AA sequence Show only first row Show all	>Lus10004066 pacid=23156737 polypeptide=Lus10004066 locus=Lus10004066.g ID=Lus10004066.BGIv1.0 annot-version=v1.0 MKTSLHIDEDAQEQLENRGNNYDMINHHRHQGNNNYDMQVIGRFLSYASRGDRVGLNMMLREEGTSPDVQDYDQRTAMHLAASEGHAPIVELLLLYKANL NLKDRWQRTTVRHDQDFNEVKFDISELDTQQVSKVVQGVMGESMKVKWRGTWVVKTVIKSQIRQPVKIKLLSAKDDTLLRELRHPNILQFLGSIVDEEQV ILITEHLPKGNLDSILAEKIRLDLPIAIRFALDIARGMNYLHEHKPMPIVHNHLDLRNLLQDGGGHLKIGEYWVQMLYEQGQPNQSNGYNARTIQANIHS TDNDISQFGFIFYQMLEGKQSTTSTESLNVGDFELNFSLSRCPQRIKQLIERCVMSKNRKERPSFAGIIETLEEVSAYVKKVACPVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10004066 [exp]	0	1
					Lus10003536 [exp]	1.7	1.0000
					Lus10011425 [exp]	2.8	1.0000
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10031524 [exp]	3.5	1.0000
					Lus10009727 [exp]	7.7	1.0000
					Lus10022214 [exp]	9.2	1.0000
AT1G04500			CCT motif family protein (.1)		Lus10014478 [exp]	11.0	1.0000
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007069 [exp]	11.1	1.0000
					Lus10029107 [exp]	11.4	1.0000
AT2G24370			Protein kinase protein with ad...		Lus10008542 [exp]	11.8	1.0000
AT5G19730			Pectin lyase-like superfamily ...		Lus10007114 [exp]	12.6	1.0000

Compare expression of checked genes

Lus10004066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.