Plant FIBer expression Database

Lus10004069 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01300 114 / 3e-33 unknown protein
AT1G15010 102 / 9e-29 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009104
[exp]
257 / 1e-89 AT2G01300 127 / 5e-38 unknown protein
Lus10002277
[exp]
81 / 5e-20 AT2G01300 95 / 3e-25 unknown protein
Lus10004062
[exp]
79 / 1e-19 AT2G01300 95 / 4e-25 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G127800
[exp]
105 / 4e-30 AT2G01300 150 / 4e-47 unknown protein
Potri.004G093100
[exp]
98 / 5e-27 AT2G01300 113 / 7e-33 unknown protein
Potri.004G092800
[exp]
97 / 1e-26 AT2G01300 122 / 2e-36 unknown protein
Potri.004G093000
[exp]
96 / 2e-26 AT2G01300 107 / 2e-30 unknown protein
Potri.010G115100
[exp]
80 / 5e-20 AT2G01300 102 / 3e-28 unknown protein
PFAM info
Representative CDS sequence
>Lus10004069 pacid=23156728 polypeptide=Lus10004069 locus=Lus10004069.g ID=Lus10004069.BGIv1.0 annot-version=v1.0
ATGGCGATCTCCGCCGCAATTAATCGAAGAGACGACGACACCTCGAATAAGCCATCATACGGCGGAGGCGAGGGACACGTGGTGGACGAAGGGATGATCG
TGCTGAGGAAGCGGATCGGGGAGATGAAGATGGCGGAGAAGAGCTACGAGCCGCCGGAGGAGTGGGCCGAGTGGGAGAAGCAACACTACGCCGTTTACGG
GGATCTGGTGTGCAAGTCGTTGGGAGTGATGCAGAGGTCGTTGATGAGTACCAGGCCCACGTTCGCTATTGGCGCGTTGGTGATACTCGCCGCCAGCGTG
CCCGTTTCGACTTACGCGGTGGCGTCGAGAATCGCGGAGGCTGCGGATGGGGTTTTCTCTTCCCTCCATCTTCTGGGTTGA
AA sequence
>Lus10004069 pacid=23156728 polypeptide=Lus10004069 locus=Lus10004069.g ID=Lus10004069.BGIv1.0 annot-version=v1.0
MAISAAINRRDDDTSNKPSYGGGEGHVVDEGMIVLRKRIGEMKMAEKSYEPPEEWAEWEKQHYAVYGDLVCKSLGVMQRSLMSTRPTFAIGALVILAASV
PVSTYAVASRIAEAADGVFSSLHLLG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G01300 unknown protein Lus10004069
[exp]
0 1
AT5G39670 Calcium-binding EF-hand family... Lus10042369
[exp]
10.8 0.7822
AT3G57450 unknown protein Lus10035455
[exp]
16.0 0.7782
AT3G57450 unknown protein Lus10031071
[exp]
25.9 0.7640
AT4G33920 Protein phosphatase 2C family ... Lus10002110
[exp]
32.1 0.7599
Lus10025204
[exp]
35.1 0.7518
AT5G53550 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) Lus10022358
[exp]
36.2 0.7283
AT1G42990 bZIP AtBZIP60 Bbasic region/leucine zipper m... Lus10040069
[exp]
36.4 0.7598
AT2G23810 TET8 tetraspanin8 (.1) Lus10008891
[exp]
37.1 0.7455
AT2G46080 unknown protein Lus10018821
[exp]
37.7 0.7294
AT1G09070 (AT)SRC2, (AT)S... soybean gene regulated by cold... Lus10029901
[exp]
41.7 0.7495

Lus10004069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.