Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38060 164 / 4e-53 unknown protein AT1G65000 51 / 2e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009105 [exp] 236 / 4e-81 AT5G38060 161 / 6e-52 unknown protein Lus10026159 [exp] 43 / 1e-05 AT1G65000 119 / 2e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G122500 [exp] 165 / 2e-53 AT5G38060 162 / 2e-52 unknown protein Potri.013G078866 [exp] 47 / 1e-07 AT1G65000 118 / 2e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004070 pacid=23156707 polypeptide=Lus10004070 locus=Lus10004070.g ID=Lus10004070.BGIv1.0 annot-version=v1.0 ATGGAGAAAGTTGCTCTGTCGACGAATTCGATCCGCGTCGGGCTCGCCCCGATGCCTTCTCACCGGAGAATTGCGCCGTCGCCGTCGCCGTCGTCGAAGG GTCTTCAGTTGTGCTTCCGGAGATGCGGTACGCCGATGATGAATTTTGGATCGCCGAGAATTTGTCAGGTAGTGATTCGGAGTTGTTTAAACCGTGAAAG CGAGGCTAAGAATCTGAGAACTTGTAAGAGCTGTAAAACCCAGTTCGACCCAGTTCTCAATCACCCTCGTGCTTGCCGATTCCACACTGCCCATTACGGA GGAGAGACGAAGAGGAAGTTCGAGAGCGTGTACAGTGGAGGCACCATGAACACACCAGACTCGGGCAGAGTTCTACAGTACTGGCATTGTTGTGGATCCG AAGACCCCTTTGATCCTGGCTGCACTGCCTCTCCCCACCAAACGTATGATGATTGA
AA sequence Show only first row Show all	>Lus10004070 pacid=23156707 polypeptide=Lus10004070 locus=Lus10004070.g ID=Lus10004070.BGIv1.0 annot-version=v1.0 MEKVALSTNSIRVGLAPMPSHRRIAPSPSPSSKGLQLCFRRCGTPMMNFGSPRICQVVIRSCLNRESEAKNLRTCKSCKTQFDPVLNHPRACRFHTAHYG GETKRKFESVYSGGTMNTPDSGRVLQYWHCCGSEDPFDPGCTASPHQTYDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38060			unknown protein		Lus10004070 [exp]	0	1
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10015741 [exp]	1.7	0.8662
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040399 [exp]	2.4	0.8776
AT1G32860			Glycosyl hydrolase superfamily...		Lus10017344 [exp]	2.8	0.8729
AT5G17560			BolA-like family protein (.1)		Lus10009527 [exp]	4.7	0.8542
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10040927 [exp]	4.8	0.8361
AT4G17960			unknown protein		Lus10030960 [exp]	5.8	0.8419
AT1G76660			unknown protein		Lus10025171 [exp]	6.3	0.8643
AT3G13620			Amino acid permease family pro...		Lus10034046 [exp]	7.0	0.8602
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10038734 [exp]	7.1	0.8293
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10026638 [exp]	8.9	0.8571

Compare expression of checked genes

Lus10004070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.