Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71080 171 / 1e-53 RNA polymerase II transcription elongation factor (.1) AT5G38050 148 / 5e-45 RNA polymerase II transcription elongation factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009106 [exp] 237 / 3e-79 AT5G38050 196 / 4e-61 RNA polymerase II transcription elongation factor (.1) Lus10042948 [exp] 182 / 4e-57 AT1G71080 281 / 7e-93 RNA polymerase II transcription elongation factor (.1) Lus10032448 [exp] 179 / 3e-56 AT1G71080 280 / 5e-93 RNA polymerase II transcription elongation factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G114900 [exp] 188 / 2e-60 AT1G71080 286 / 1e-95 RNA polymerase II transcription elongation factor (.1) Potri.004G092200 [exp] 186 / 5e-59 AT1G71080 194 / 2e-59 RNA polymerase II transcription elongation factor (.1) Potri.008G127900 [exp] 184 / 6e-59 AT1G71080 285 / 1e-95 RNA polymerase II transcription elongation factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09816 [flax] [poplar] EAF RNA polymerase II transcription elongation factor
Representative CDS sequence Show only first row Show all	>Lus10004071 pacid=23156712 polypeptide=Lus10004071 locus=Lus10004071.g ID=Lus10004071.BGIv1.0 annot-version=v1.0 ATGGCGAACATCAACAACGAAGAACCCAGCACTGCTCCACAGCCTGATCGCTGGTACGATCTTACCCTAGGCCCATCCTTTACTGATCACTCAAAGTACT GTACTTTACGCTATGATTTCAAGCCGGCGTCGATCGATAAGAGCGAGCCAGGAATGCTCCACAAGGACAGCAACAAGAGAGTAACGGTGGAGTACAACAA CAACCAACCAGGGAAATCAAAGCTCGTCTTTGAAGGTGTGAGTGAGGATTACAAAGAGAACGACGCCGTTCTCTTCTTCGACGGCCGTTCCTTTCGCCTT GAACGCCTCCACCGTGCCGTGAAGCGCCTCAGACATGTCCGGCTGCCGGGAGATCCTGCAGCTGCTGCAACGTTGGTGGCGGCTACTACTCCCCCCTCCC CCTCCACTTGCTGCTGCTGA
AA sequence Show only first row Show all	>Lus10004071 pacid=23156712 polypeptide=Lus10004071 locus=Lus10004071.g ID=Lus10004071.BGIv1.0 annot-version=v1.0 MANINNEEPSTAPQPDRWYDLTLGPSFTDHSKYCTLRYDFKPASIDKSEPGMLHKDSNKRVTVEYNNNQPGKSKLVFEGVSEDYKENDAVLFFDGRSFRL ERLHRAVKRLRHVRLPGDPAAAATLVAATTPPSPSTCCC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71080			RNA polymerase II transcriptio...		Lus10004071 [exp]	0	1
AT1G06450			Polynucleotidyl transferase, r...		Lus10017895 [exp]	5.7	0.7320
AT1G20830		MCD1	multiple chloroplast division ...		Lus10030727 [exp]	6.1	0.7485
AT3G06330			RING/U-box superfamily protein...		Lus10033985 [exp]	9.6	0.7459
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10042995 [exp]	9.6	0.7369
AT1G29350			Kinase-related protein of unkn...		Lus10000188 [exp]	11.2	0.7287
AT5G52030			TraB family protein (.1.2)		Lus10015005 [exp]	15.2	0.7217
AT5G19590			Protein of unknown function, D...		Lus10033088 [exp]	16.2	0.7261
AT4G39680			SAP domain-containing protein ...		Lus10016433 [exp]	19.1	0.7225
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10016907 [exp]	26.4	0.6730
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10040567 [exp]	30.7	0.6734

Compare expression of checked genes

Lus10004071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.