Plant FIBer expression Database

Lus10004072 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009106
[exp]
164 / 7e-50 AT5G38050 196 / 4e-61 RNA polymerase II transcription elongation factor (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G092200
[exp]
40 / 0.0005 AT1G71080 194 / 2e-59 RNA polymerase II transcription elongation factor (.1)
PFAM info
Representative CDS sequence
>Lus10004072 pacid=23156735 polypeptide=Lus10004072 locus=Lus10004072.g ID=Lus10004072.BGIv1.0 annot-version=v1.0
ATGCAATTTGGCTCGCTTGCATCCCTCGGCTATCTCCAGAATCATGCTTTGACCTTTTGTTTTCATTGTAATCTACAGCTGGAACATACAGTCACCGAAG
AAGAGAGGAATGTGATTCCTCAAAACCCAGCAACCTCGTCATCGTCTCCAGATGCGAAGAACTACGAAGCTGAAGAGAAGGAAATGGACACGACAGCTGG
CGGGTCCGAGGAAAGTGTAGACATACTCAGTGTTGATGATGAAGATGGTGGTGTGGAAACAACAAGCAACAGAAACAGCAGCGGGAGTGGAGGAAGGGTA
CTTGACATCGACATAAACGTGGCGCACCAAGCTGAAATGGAAGACGAGAATGCTGAAGTAGATATTAACGACGATGATGATGTCGCGGAGGAGGGAAATG
GCCCTAATGCAGCTGAAGCCCTCAAGGCTCAGGTGGGTGCAGCAGAGGACGAGGATGAATCTACGAGCTCCGGTACAAATAGTGGCAGCGACAGTAGCAG
GAGTGGAGCAGGGACCAGTAGCAGCAGCAGTGGTACTGAGACTACCAGTGGTGGCGACTCCTCGTCTGGCTGA
AA sequence
>Lus10004072 pacid=23156735 polypeptide=Lus10004072 locus=Lus10004072.g ID=Lus10004072.BGIv1.0 annot-version=v1.0
MQFGSLASLGYLQNHALTFCFHCNLQLEHTVTEEERNVIPQNPATSSSSPDAKNYEAEEKEMDTTAGGSEESVDILSVDDEDGGVETTSNRNSSGSGGRV
LDIDINVAHQAEMEDENAEVDINDDDDVAEEGNGPNAAEALKAQVGAAEDEDESTSSGTNSGSDSSRSGAGTSSSSSGTETTSGGDSSSG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G38050 RNA polymerase II transcriptio... Lus10004072
[exp]
0 1
AT3G57600 AP2_ERF DREB2F Integrase-type DNA-binding sup... Lus10011319
[exp]
10.6 0.6480
AT4G25440 C3HZnF ZFWD1 zinc finger WD40 repeat protei... Lus10021640
[exp]
16.2 0.6918
AT1G51340 MATE efflux family protein (.1... Lus10027367
[exp]
22.3 0.6902
AT1G04760 ATVAMP726 vesicle-associated membrane pr... Lus10011737
[exp]
53.3 0.6681
AT3G22380 TIC time for coffee (.1.2) Lus10002447
[exp]
55.9 0.6383
AT5G38050 RNA polymerase II transcriptio... Lus10009106
[exp]
86.3 0.6305
AT2G36730 Pentatricopeptide repeat (PPR)... Lus10040171
[exp]
86.4 0.5996
AT2G20020 CAF1, ATCAF1 RNA-binding CRS1 / YhbY (CRM) ... Lus10043237
[exp]
93.5 0.6432
AT3G02570 PMI1, MEE31 PHOSPHOMANNOSE ISOMERASE 1, MA... Lus10017603
[exp]
99.1 0.6318
AT4G00490 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2... Lus10037846
[exp]
108.9 0.6169

Lus10004072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.