Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11170 117 / 4e-29 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 109 / 2e-26 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41550 109 / 3e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46470 108 / 6e-26 RPS6 RESISTANT TO P. SYRINGAE 6, disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G48770 107 / 1e-25 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 107 / 1e-25 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT1G66090 105 / 3e-25 Disease resistance protein (TIR-NBS class) (.1) AT2G16870 105 / 8e-25 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19500 104 / 1e-24 nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding (.1.2) AT5G58120 104 / 1e-24 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009107 [exp] 479 / 3e-161 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10019654 [exp] 286 / 5e-88 AT4G12010 376 / 2e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10006789 [exp] 266 / 2e-82 AT4G12010 325 / 7e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10007030 [exp] 257 / 2e-80 AT4G12010 316 / 3e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 265 / 3e-80 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10006732 [exp] 260 / 3e-80 AT4G11170 322 / 8e-97 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10024149 [exp] 248 / 2e-79 AT4G19510 213 / 8e-61 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) Lus10017419 [exp] 248 / 6e-78 AT4G12010 272 / 9e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015650 [exp] 238 / 7e-72 AT4G12010 346 / 3e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G070700 [exp] 145 / 2e-38 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 133 / 2e-34 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G095932 [exp] 126 / 1e-32 AT4G11170 294 / 5e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G098900 [exp] 127 / 2e-32 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 122 / 9e-31 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097800 [exp] 119 / 1e-29 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 118 / 3e-29 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 115 / 3e-28 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G098500 [exp] 113 / 9e-28 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.004G088500 [exp] 112 / 3e-27 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10004073 pacid=23156726 polypeptide=Lus10004073 locus=Lus10004073.g ID=Lus10004073.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCCTCCGATGAGCAGAGGGCTTCATCATCAACTGCTCCCCAATACACCGGGAAATGGGAACACGGTGGTTTTGTTTGTTTCAGAGGTGATA CACGGGGTATCTTTACTGATGTAATGCTTGAAAGAACAGAAGACATAGGCGAGCTACTCTCCATCCTCGCCAAATCCGCAATGTCAGTTGTGATATTCTC GGAGAAGTTCGCAGAGTCGAGATGGTGCCTGAATGAAGTGGTCACCACGGGGTATAGCATGGAACAATTCGGACATTGGGTGCTTCCAGTTTTCTATCGA GTGAATCCAGATGACATGTCGGATGATCCTGGCAGCTACTCCTCTATCATTGGCACCGTACATAATCCCACCTTAGAGGAGAAGATGAGATGGATGTATG CTCTGAATGCGGTGGCTAAGGTGCAGGGCGTTCCTCAAATCGACGATTATGAATTGCGAGAGACAGCTGTGGGTGATGTTTTGAAGAAACTGATGGGCAT GTCTTCAAGTGGGGAATTTAGCAACTTGGTTGGAATGGAGACCCGGATGTTGAAGTTTCAACTACTACTTCCTACAGACAAATCATCAAATACTACTTGC ATTATTGGACTCTGGGGAATGGGAGGGTTAGGTAAAAGCACGCAATCCAATTCTTGGTATCAGATATTGACATCTCCAAGAAACAGAATCAAACATCATT TCATTTCAAATGTAAATGGAAGGTGCAATTCGGAGCGTGGAGTTGAGGAACTAGTACGAGATCTCTATTCAACTTTGTTGTCTGAGAACAATCTAAGTCT CAGAGATCTGGATGTTAATTATAGAAGGGAACGTCTTTCTCGCTTGAAAGTGGTTAATGTTCTCGACAATGTCGAGACTACACAGAGCACCTACTTTTGG CGGAAATTCATGATCCCACTAAACTCTTCGGTCCTGGGAGTGTGA
AA sequence Show only first row Show all	>Lus10004073 pacid=23156726 polypeptide=Lus10004073 locus=Lus10004073.g ID=Lus10004073.BGIv1.0 annot-version=v1.0 MASSSDEQRASSSTAPQYTGKWEHGGFVCFRGDTRGIFTDVMLERTEDIGELLSILAKSAMSVVIFSEKFAESRWCLNEVVTTGYSMEQFGHWVLPVFYR VNPDDMSDDPGSYSSIIGTVHNPTLEEKMRWMYALNAVAKVQGVPQIDDYELRETAVGDVLKKLMGMSSSGEFSNLVGMETRMLKFQLLLPTDKSSNTTC IIGLWGMGGLGKSTQSNSWYQILTSPRNRIKHHFISNVNGRCNSERGVEELVRDLYSTLLSENNLSLRDLDVNYRRERLSRLKVVNVLDNVETTQSTYFW RKFMIPLNSSVLGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11170			Disease resistance protein (TI...		Lus10004073 [exp]	0	1
AT4G05160			AMP-dependent synthetase and l...		Lus10021431 [exp]	12.9	0.6651
AT3G26950			unknown protein		Lus10032011 [exp]	53.4	0.5646
AT5G44620		CYP706A3	"cytochrome P450, family 706, ...		Lus10024575 [exp]	75.2	0.5560
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Lus10019630 [exp]	125.3	0.5295
AT5G55980			serine-rich protein-related (....		Lus10008880 [exp]	139.3	0.5158
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10036932 [exp]	143.2	0.5196
AT5G02910			F-box/RNI-like superfamily pro...		Lus10002819 [exp]	146.4	0.4988
AT2G22680		WAVH1	WAV3 homolog 1, Zinc finger (C...		Lus10039634 [exp]	169.9	0.4906
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10037092 [exp]	174.1	0.5099
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10009549 [exp]	204.4	0.4766

Compare expression of checked genes

Lus10004073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.