Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19670 234 / 7e-75 CORI1, ATHCOR1, ATCLH1 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1) AT5G43860 189 / 1e-57 ATCLH2 ARABIDOPSIS THALIANA CHLOROPHYLLASE 2, chlorophyllase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014702 [exp] 603 / 0 AT1G19670 229 / 4e-73 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1) Lus10039372 [exp] 188 / 5e-57 AT5G43860 392 / 2e-137 ARABIDOPSIS THALIANA CHLOROPHYLLASE 2, chlorophyllase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G214200 [exp] 240 / 8e-77 AT1G19670 237 / 7e-76 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1) Potri.010G082300 [exp] 200 / 1e-61 AT5G43860 370 / 1e-128 ARABIDOPSIS THALIANA CHLOROPHYLLASE 2, chlorophyllase 2 (.1) Potri.005G214100 [exp] 59 / 1e-10 AT1G19670 59 / 2e-11 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07224 [flax] [poplar] Chlorophyllase Chlorophyllase
Representative CDS sequence Show only first row Show all	>Lus10004076 pacid=23169968 polypeptide=Lus10004076 locus=Lus10004076.g ID=Lus10004076.BGIv1.0 annot-version=v1.0 ATGGCAATGGCTGCTTTCTTATTCTTCTTACTGGTGCTCATATCCACACCAGTACTACTGATTTCAGGCGGAAGCGTAAGTTCTCCGCTTCCGGTATTCG ATAATGGAGAAGTCGGGTTTGCAAGTCACAACGTCCAAGTAAACAGCAGCAATCCTACTGCACCTCCGAGGCCGCTCTTCATGGTTGCTCCGAAACAAGC CGGAAAATACCCGATATTCCTGTTCGCACACGGCACCTTCATCAACAGCGAACTCTACTCCACTATCCTCTCCCACATTTCCTCACATGGCTACATCGTC GTCGCCCCACTGTTATTCGATTCAATGTTCAACATGCCAAGCCAGCTGGAGGAAATCGACTACCTAGCACAAGTCATAAGATGGCTCCCAACGGGCCTAT CTTCCCAACTCCAAAACGACGTCCTCCCGGATTTTGACCACCTAGCCGTAGGAGGCCACAGCCGAGGTGGCAAATCCTCGTTTGCTCTAGCACTCGGGTA CCAACGCAAACCCGATGATCTACCCATCTCGGCCTTGGTAGGGATCGACCCGGTGGCAGGAAGCAGCAAGGACTCGCGAACCGATCCGAAAATACTCACC TACCAGCCCGAGTCGTTCGACCTATCCATGCCCGTCTCAGTGATTGGAACAGGGCTAGGCAATCGGTCAGCCTTCATCGGTTTCCCAGCATGCGCGCCTA ACGAGGTGAGCCACGTGGAGTTTTACTACGAGTCAAGGGCTCCAAAGAGCCACCTCGTCCCCGCAGAGTTCGGACACATGGACATGGTGGACGACGTGAG CCCGCTGGACGTCGTGAATTGGACGATGGTGAATGCGATGTGCAAGAGTGGGGGTAGCTGGTTCAATTCGAAGGATAAGATGAGGAGCACCGTGGGAGGG ATCGTGGTGGCTTTCTTGAACTCTTGTTTCGATGCCAAAGGGGGTGATGATTATCTCACTATTTTGAGGAATCCTGGAGTTTGTCCTGCTAAGCTTCAGA AGCCTCAGTACCAATTCAGCAGTTTGGCTAAGGAATAA
AA sequence Show only first row Show all	>Lus10004076 pacid=23169968 polypeptide=Lus10004076 locus=Lus10004076.g ID=Lus10004076.BGIv1.0 annot-version=v1.0 MAMAAFLFFLLVLISTPVLLISGGSVSSPLPVFDNGEVGFASHNVQVNSSNPTAPPRPLFMVAPKQAGKYPIFLFAHGTFINSELYSTILSHISSHGYIV VAPLLFDSMFNMPSQLEEIDYLAQVIRWLPTGLSSQLQNDVLPDFDHLAVGGHSRGGKSSFALALGYQRKPDDLPISALVGIDPVAGSSKDSRTDPKILT YQPESFDLSMPVSVIGTGLGNRSAFIGFPACAPNEVSHVEFYYESRAPKSHLVPAEFGHMDMVDDVSPLDVVNWTMVNAMCKSGGSWFNSKDKMRSTVGG IVVAFLNSCFDAKGGDDYLTILRNPGVCPAKLQKPQYQFSSLAKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Lus10004076 [exp]	0	1
AT1G70820			phosphoglucomutase, putative /...		Lus10015835 [exp]	2.6	0.8941
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10040120 [exp]	4.9	0.8722
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10036862 [exp]	5.2	0.8641
AT1G30260		AGL79	unknown protein		Lus10023289 [exp]	8.5	0.8461
AT2G41705			camphor resistance CrcB family...		Lus10028071 [exp]	10.9	0.7905
AT1G70820			phosphoglucomutase, putative /...		Lus10009327 [exp]	13.0	0.8482
AT1G70820			phosphoglucomutase, putative /...		Lus10020414 [exp]	13.6	0.8154
AT2G39650			Protein of unknown function (D...		Lus10020938 [exp]	14.5	0.8280
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10040175 [exp]	20.3	0.8526
					Lus10029617 [exp]	22.0	0.8622

Compare expression of checked genes

Lus10004076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.