Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03070 234 / 2e-77 Bax inhibitor-1 family protein (.1.2) AT3G63310 220 / 5e-72 BIL4 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1) AT4G02690 214 / 1e-69 Bax inhibitor-1 family protein (.1) AT4G15470 138 / 8e-40 Bax inhibitor-1 family protein (.1) AT4G14730 129 / 9e-37 Bax inhibitor-1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022085 [exp] 238 / 7e-79 AT1G03070 406 / 3e-145 Bax inhibitor-1 family protein (.1.2) Lus10042631 [exp] 237 / 2e-78 AT1G03070 408 / 5e-146 Bax inhibitor-1 family protein (.1.2) Lus10041240 [exp] 127 / 1e-35 AT4G15470 369 / 2e-130 Bax inhibitor-1 family protein (.1) Lus10021950 [exp] 84 / 2e-19 AT4G15470 288 / 8e-99 Bax inhibitor-1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G049000 [exp] 220 / 5e-72 AT1G03070 393 / 2e-140 Bax inhibitor-1 family protein (.1.2) Potri.005G214000 [exp] 211 / 1e-68 AT1G03070 310 / 2e-107 Bax inhibitor-1 family protein (.1.2) Potri.005G213900 [exp] 178 / 2e-55 AT3G63310 259 / 9e-88 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1) Potri.008G157100 [exp] 169 / 8e-52 AT3G63310 243 / 4e-81 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1) Potri.010G028900 [exp] 138 / 6e-40 AT4G15470 348 / 2e-122 Bax inhibitor-1 family protein (.1) Potri.008G199200 [exp] 134 / 3e-38 AT4G15470 348 / 3e-122 Bax inhibitor-1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0453 [flax] [poplar] Apoptosis-Inhib PF01027 [flax] [poplar] Bax1-I Inhibitor of apoptosis-promoting Bax1
Representative CDS sequence Show only first row Show all	>Lus10004077 pacid=23169965 polypeptide=Lus10004077 locus=Lus10004077.g ID=Lus10004077.BGIv1.0 annot-version=v1.0 ATGTGGAACGATCCGTACAAGAAGGGCAATGATGTGGAGGCGGGTAACGCGGGTTCGTCGGAGGCTCTGTACCCGATGATGATGGAAAGCCCGGAGCTCC GGTGGTCTTTCATCCGGAAAATCTACTCCATCATCGCCATCCAGTTGCTCGCAACGATCGCCGTCGCGGCCACCGTGGTTTTCGTACCTCCCATTGCGGT TTTCTTCGTCACTACCAGCGCTGGATTGGCTCTATACATCGTCCTTCTAATCACGCCTTTCATAGTTTTATGCCCGTTGTACTTCTATCACCAGAAGCAT CCGGTGAATTACATTCTGTTGGCGATTTTCACCATCGCCATTGCTTTCTCCGTGGGATTGACATGCGCATTCACGAGTGGGAAAATTATCCTGGAAGCAG CTATCCTGACAACTGTTTTAGTTGTGGGTCTAACCCTCTACACATTCTGGGCAGCAAAGAGAGGCCATGATTTCAACTTCCTTGGCCCCTTCTTGTTTGG CGCACTCCTTCTTCTCATGGTGTTTGCTCTCATCCAGGCTCTGTTCCCGTTGGGAAAGGTGTCAGTGATGATATACGGGCTCTTAGGATCAATCATCTTC TGTGGGTACATTGTGTATGACACTGATAACCTCATCAAGCGCTACTCGTACGATGAGTACATCTGGGCTGCGGTGTCTCTCTACTTGGACATCATTAACC TTTTCCTCACGCTCTTGACCCTCTTGGATGCTGCTGATTCGTGA
AA sequence Show only first row Show all	>Lus10004077 pacid=23169965 polypeptide=Lus10004077 locus=Lus10004077.g ID=Lus10004077.BGIv1.0 annot-version=v1.0 MWNDPYKKGNDVEAGNAGSSEALYPMMMESPELRWSFIRKIYSIIAIQLLATIAVAATVVFVPPIAVFFVTTSAGLALYIVLLITPFIVLCPLYFYHQKH PVNYILLAIFTIAIAFSVGLTCAFTSGKIILEAAILTTVLVVGLTLYTFWAAKRGHDFNFLGPFLFGALLLLMVFALIQALFPLGKVSVMIYGLLGSIIF CGYIVYDTDNLIKRYSYDEYIWAAVSLYLDIINLFLTLLTLLDAADS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03070			Bax inhibitor-1 family protein...		Lus10004077 [exp]	0	1
AT2G21340			MATE efflux family protein (.1...		Lus10018080 [exp]	1.7	0.8214
AT2G37110			PLAC8 family protein (.1)		Lus10015072 [exp]	6.9	0.7997
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033962 [exp]	9.5	0.7684
AT5G03330			Cysteine proteinases superfami...		Lus10023019 [exp]	10.6	0.7587
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10030301 [exp]	13.4	0.8034
AT2G21340			MATE efflux family protein (.1...		Lus10042074 [exp]	14.5	0.7537
AT2G25920			unknown protein		Lus10002434 [exp]	16.7	0.7460
AT1G08800			Protein of unknown function, D...		Lus10024869 [exp]	23.5	0.7369
AT5G24810			ABC1 family protein (.1.2)		Lus10020168 [exp]	24.5	0.7517
AT2G44870			unknown protein		Lus10020395 [exp]	30.0	0.7503

Compare expression of checked genes

Lus10004077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.