Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63310 67 / 5e-13 BIL4 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1) AT4G02690 67 / 9e-13 Bax inhibitor-1 family protein (.1) AT1G03070 66 / 1e-12 Bax inhibitor-1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004077 [exp] 70 / 9e-14 AT1G03070 404 / 2e-144 Bax inhibitor-1 family protein (.1.2) Lus10042631 [exp] 68 / 4e-13 AT1G03070 408 / 5e-146 Bax inhibitor-1 family protein (.1.2) Lus10022085 [exp] 67 / 8e-13 AT1G03070 406 / 3e-145 Bax inhibitor-1 family protein (.1.2) Lus10041240 [exp] 61 / 2e-10 AT4G15470 369 / 2e-130 Bax inhibitor-1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G049000 [exp] 71 / 2e-14 AT1G03070 393 / 2e-140 Bax inhibitor-1 family protein (.1.2) Potri.005G214000 [exp] 67 / 5e-13 AT1G03070 310 / 2e-107 Bax inhibitor-1 family protein (.1.2) Potri.010G028900 [exp] 59 / 6e-10 AT4G15470 348 / 2e-122 Bax inhibitor-1 family protein (.1) Potri.008G199200 [exp] 57 / 2e-09 AT4G15470 348 / 3e-122 Bax inhibitor-1 family protein (.1) Potri.005G213900 [exp] 54 / 1e-08 AT3G63310 259 / 9e-88 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0453 [flax] [poplar] Apoptosis-Inhib PF01027 [flax] [poplar] Bax1-I Inhibitor of apoptosis-promoting Bax1
Representative CDS sequence Show only first row Show all	>Lus10004078 pacid=23169976 polypeptide=Lus10004078 locus=Lus10004078.g ID=Lus10004078.BGIv1.0 annot-version=v1.0 ATGGTTGACCCCGTCGACTGGAGCAAAACGGCCGGAGACTGCGAATCCGCCATAATCTCCGACGACATTCCCCTGTTTCAGTCACAGGCCTTCCTTAACA GAGTTTACTTAACATTAACGCTTCAATTTCTCATAACAAGCACAACCCTCATTGTTTCCCTTTCTCTAATCACGGATTTCGGAAGCTCATACACCAATCT CGCCGTACATATCGTCAGCGGCGTCACCCTTTTCATTGGTTTGAATTTCGCTTACCTCTCTGTTTTTAAAATTTGTTTCAGAGGATGGAAATGGAATGTG CTCATCGGATCAATTACCAGTTTTTCCCCCACTCTACCAGGAATCGGGCTGTTGTACAAGTACCGAGAGGAGAGTCCGGCTAATTACGTGCTGCTCTGTC TATGCACGGTCGGTGTTTCGTATCTGGTTGCTTTGTCAAGTGCTTATTTCGTCGCGGCCGCCGGTCGAATCCCCGGCTTGAAGATTTTCTTGGAGTCATG GTGCCTAACAAGTATAATGTTCGCAAGCCTGTCTTGTCACGCTCTGAAAGCAGCAAGAAAAGGGATAGATTTCAGATTCCTGGAGCTCTACCTGCTCAAG GCTGCCCTAGCTCTGATCCTGCTTCTGCTTTTTCTCCTGATTCTGAACCCTCCTGGAAAACTCTCATGTCACTTGATTATTATGGCGGGTTTCGGTTCGG CCCTGTATAGTATGTACATTGTTTACTTCACCAATGGCCTAGTGATCGTAACGCGGTTTCCGTACGAACAACACATCTGGGCTTCCATGTCTCTGTACAT CTACGTCGTCGCCCTCTTCCTCTTCTTCTTCTTACTCATTGCTGATGCTTAA
AA sequence Show only first row Show all	>Lus10004078 pacid=23169976 polypeptide=Lus10004078 locus=Lus10004078.g ID=Lus10004078.BGIv1.0 annot-version=v1.0 MVDPVDWSKTAGDCESAIISDDIPLFQSQAFLNRVYLTLTLQFLITSTTLIVSLSLITDFGSSYTNLAVHIVSGVTLFIGLNFAYLSVFKICFRGWKWNV LIGSITSFSPTLPGIGLLYKYREESPANYVLLCLCTVGVSYLVALSSAYFVAAAGRIPGLKIFLESWCLTSIMFASLSCHALKAARKGIDFRFLELYLLK AALALILLLLFLLILNPPGKLSCHLIIMAGFGSALYSMYIVYFTNGLVIVTRFPYEQHIWASMSLYIYVVALFLFFFLLIADA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02690			Bax inhibitor-1 family protein...		Lus10004078 [exp]	0	1
AT5G03260		LAC11	laccase 11 (.1)		Lus10023189 [exp]	1.4	0.9835
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10021955 [exp]	2.8	0.9778
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10032425 [exp]	3.2	0.9795
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10007243 [exp]	3.9	0.9791
AT4G14940		ATAO1	amine oxidase 1 (.1)		Lus10021922 [exp]	4.9	0.9673
AT4G34180			Cyclase family protein (.1)		Lus10031453 [exp]	7.5	0.9696
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	7.7	0.9750
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10009313 [exp]	8.1	0.9659
					Lus10007415 [exp]	8.1	0.9706
AT1G69500		CYP704B1	"cytochrome P450, family 704, ...		Lus10036772 [exp]	9.7	0.9166

Compare expression of checked genes

Lus10004078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.