Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63300 151 / 8e-42 FKD1 FORKED 1 (.1.2) AT3G22810 100 / 3e-23 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G14740 97 / 2e-22 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region AT5G43870 77 / 2e-15 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G17350 46 / 2e-05 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT5G47440 45 / 3e-05 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014704 [exp] 182 / 1e-56 AT3G63300 143 / 9e-41 FORKED 1 (.1.2) Lus10014703 [exp] 127 / 5e-35 AT3G22810 297 / 2e-99 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10039370 [exp] 99 / 9e-24 AT4G14740 219 / 2e-69 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10006614 [exp] 100 / 3e-23 AT4G14740 504 / 5e-177 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10041187 [exp] 94 / 3e-21 AT4G14740 315 / 1e-103 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10021903 [exp] 87 / 2e-19 AT5G43870 159 / 8e-47 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10004734 [exp] 41 / 0.0008 AT4G17350 389 / 2e-133 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G213800 [exp] 179 / 2e-52 AT3G63300 388 / 7e-131 FORKED 1 (.1.2) Potri.002G049200 [exp] 176 / 3e-51 AT3G63300 418 / 1e-142 FORKED 1 (.1.2) Potri.010G082400 [exp] 108 / 3e-26 AT4G14740 468 / 1e-162 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Potri.008G157000 [exp] 102 / 6e-24 AT3G22810 430 / 9e-148 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.001G156700 [exp] 47 / 1e-05 AT4G17350 348 / 8e-118 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.003G077900 [exp] 47 / 1e-05 AT4G17350 356 / 4e-121 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.018G042000 [exp] 41 / 0.0007 AT4G32785 159 / 1e-47 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05703 [flax] [poplar] Auxin_canalis Auxin canalisation
Representative CDS sequence Show only first row Show all	>Lus10004079 pacid=23169977 polypeptide=Lus10004079 locus=Lus10004079.g ID=Lus10004079.BGIv1.0 annot-version=v1.0 ATGGAAGAAACCCCTTCTTTAATCAGACCAACCCACCACTTCCCCACCACCACATCCACAGCCATGATTCCTCTTCCAGAGTCCCCAAAACTACCCATGG AATTCCTCTCAAGATCCTGGAGCGTCTCTGCCCTCCAAGTCTCCAAAGCCTTAGTCTCCAACTGCTTATCCTCTTCCATCTCCACCAACTCCCTTTCCTC CTCCTCTTCCTCCACCATCCCTGAAGAACTCGCCACTCCTCCCGCCGAACTCTCTCAAAACAATCAGTTCTCCTTCGCTTCCTCTGCCACCTCCCAGCTT GTTCTCGAGCGCATCATGTCCCAGTCCGAAGTTTCGCCATTGACGTCCGGCAGGCTTTCTCACAGCAGCGGACCTTTGAACTTCGGCGAACCGGATAGTC CTCCTCAAACTCTTTCACCCTCTGACGACTTCGAAGACGTCGTTAAGTATTTCCGTGCACACAAATCCATAAACCCTCTCTTCACCGGCGGCCGAGCAAG CGGCGGGGGCTGGTCTATTCCTTCCACGCCAGCAGGCGGCGGCGGGGGACCTGCGACTCCGGCAGGCGGAGGAGGGGGGCAGTGCGTTGAAGCTGCCGAA GCGTTGGGAGCTGAGCGAGAGCATCTTGCTTCTGTCGTCAGCTCCGCCGTCAACGTCCGCTCTCACGATGACATCACAACCCTCACCGCCGCTGCGGCGA CAGGGGATCTCCACTGGAAAATGGTCTGTGTTTACATCCACAGAACAGGGGAGATGTGGTACTGGAAGTACACAAGGATCTTGCAGCATGGCCAGGGAGG CACCTTCTGGACGACGGAGATGAGCGCCGGTACTTCGGGCTCCAGACTTCGGCCAGAGGGCTTGTGGAATTCGAGTGCAGGAACCAAAGAGAGCACGACA TTTGGACTCAAGGCGTCTCCAAGCTTCTATCCATTGTTGCCCAAAGCAAACACAGACGCTGCTGAGAGCTTTCTTTGA
AA sequence Show only first row Show all	>Lus10004079 pacid=23169977 polypeptide=Lus10004079 locus=Lus10004079.g ID=Lus10004079.BGIv1.0 annot-version=v1.0 MEETPSLIRPTHHFPTTTSTAMIPLPESPKLPMEFLSRSWSVSALQVSKALVSNCLSSSISTNSLSSSSSSTIPEELATPPAELSQNNQFSFASSATSQL VLERIMSQSEVSPLTSGRLSHSSGPLNFGEPDSPPQTLSPSDDFEDVVKYFRAHKSINPLFTGGRASGGGWSIPSTPAGGGGGPATPAGGGGGQCVEAAE ALGAEREHLASVVSSAVNVRSHDDITTLTAAAATGDLHWKMVCVYIHRTGEMWYWKYTRILQHGQGGTFWTTEMSAGTSGSRLRPEGLWNSSAGTKESTT FGLKASPSFYPLLPKANTDAAESFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63300		FKD1	FORKED 1 (.1.2)		Lus10004079 [exp]	0	1
AT1G14600	GARP		Homeodomain-like superfamily p...		Lus10035093 [exp]	2.0	0.9601
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10039214 [exp]	2.8	0.9553
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10017532 [exp]	5.9	0.9521
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007660 [exp]	6.0	0.9573
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10003335 [exp]	6.0	0.9444
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	8.0	0.9580
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10039738 [exp]	9.7	0.9531
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Lus10008003 [exp]	10.1	0.8721
AT1G44760			Adenine nucleotide alpha hydro...		Lus10018190 [exp]	10.5	0.9462
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10040628 [exp]	12.0	0.9527

Compare expression of checked genes

Lus10004079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.