Plant FIBer expression Database

Lus10004080 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G63290 341 / 5e-114 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
AT4G13400 70 / 6e-13 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014705
[exp]
556 / 0 AT3G63290 275 / 1e-91 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Lus10033085
[exp]
66 / 1e-11 AT4G13400 560 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Lus10017737
[exp]
60 / 2e-09 AT4G13400 545 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G049300
[exp]
419 / 1e-143 AT3G63290 387 / 4e-132 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Potri.018G076700
[exp]
72 / 2e-13 AT4G13400 540 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF03171 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence
>Lus10004080 pacid=23169971 polypeptide=Lus10004080 locus=Lus10004080.g ID=Lus10004080.BGIv1.0 annot-version=v1.0
ATGGAAGAACCGGAAGTGCTGGAGCTGTATGAGCTACATTACTCTGATTTGATGTTATTGTGTTCAGAGTCAACTGCAAGTCCTAATCTAACAAACGATC
ATGTTTCTACTCCGTCACCTGATGAGCGACGTCGACTGGAAATGGTCCGGAGAAAGGTGATGGAAACCCTAGGTCCGATTGGCCCGGGCCTTCTGTCAAT
TACCGGCGTCCCTAAGTCCCACCATCTCCGAAGTCGCCTTCTCCCTCTCGCTCAGAAACTCGCTCTTCTTGACAACGAACGTCGGAAGCTCATTCTCAAG
GAACATGGTTTGGGGACTGATGTCTCTATGAAGAATCCAGATAGAGAAGTCTCATCCTTTGCGATGCAACTGAAATACGTTGAAGCTTTTGAGGGCTGTC
AAGCTTTTAATATGCCATTGGACTTGTGGATGGCTGATTCAGAAGTTTTGGCTGCAGGGGTGAACGAATTTAGCGATCTGGCTGATGTTTTTAAGGAGCT
AGGATATTGCATGATGCAGCTAGGATTATGTCTTGCTCGAGTGTGTGATAAAGCAATGGGCAGTGAAGAGTTGGAGAGAAGCTTGCTTGAATCCGGCACA
GCAAAGGGACGTCTTATACACTATCATTCAAGTTTTGACAATGTTGTTCGAAGAGGGAGTCTCAGAAACAAGAGGTCCTCGAACAAAATTGCCAATGTGA
AAGGATGCAAAGAACGCCCCACGAAAGTTGAGCAAAAGCAATTTGAACACTTGGATTTCATTAAAACGGGGAGTCATGAAAAGCTGTGGCAGCAATGGCA
TTATGATTATGGCATCTTCACTATTCTTACAGCACCTATGTTTCTTGGTCCGTCAGCACAAGTTCCTGTTAAAGAATGCTCTTATCCTGGTGGGAATACG
AACTTACAAATCTTCAATCCAGACAAAAATAACGTCTGTATGGTTCGAACTTCTCCAGAAAATTTCATCATTCAAGTTGGGGAGTCGGCTGACATCTTGT
CCAAGGGAAAGCTACGTTCAACACTTCATTGCGTCAACAGACCACAAAGGATGGAGTTCTTGAGTAGAGAAACGTTTGTGGTGTTTTTGCAGCCTGCTTG
GAGCAAAACCTTTTCACTCACTGGTTGTAAAATGGTTGTACAGTCTTGTTCAGATGACCAATGGTCTAACGATGGAAACAGCCTCTCGAATTCGGGGCAT
GGTTCTAATAGTTTTAAGGAAGATGTTCATAAATTGGTTCTACCGCTATCTTCACGCTTAAAAGAAGGAATGACATTTGCTGAGTTCGCTCGTGAAACGA
CCAAGCAGTATTATGGGGCCAGTGGGTTGCAGTCAAGCAGATATTACCTATCCGTGGACCCTGGTAAGGCATATTCTGCACTTTGTTCTATAACCATATG
A
AA sequence
>Lus10004080 pacid=23169971 polypeptide=Lus10004080 locus=Lus10004080.g ID=Lus10004080.BGIv1.0 annot-version=v1.0
MEEPEVLELYELHYSDLMLLCSESTASPNLTNDHVSTPSPDERRRLEMVRRKVMETLGPIGPGLLSITGVPKSHHLRSRLLPLAQKLALLDNERRKLILK
EHGLGTDVSMKNPDREVSSFAMQLKYVEAFEGCQAFNMPLDLWMADSEVLAAGVNEFSDLADVFKELGYCMMQLGLCLARVCDKAMGSEELERSLLESGT
AKGRLIHYHSSFDNVVRRGSLRNKRSSNKIANVKGCKERPTKVEQKQFEHLDFIKTGSHEKLWQQWHYDYGIFTILTAPMFLGPSAQVPVKECSYPGGNT
NLQIFNPDKNNVCMVRTSPENFIIQVGESADILSKGKLRSTLHCVNRPQRMEFLSRETFVVFLQPAWSKTFSLTGCKMVVQSCSDDQWSNDGNSLSNSGH
GSNSFKEDVHKLVLPLSSRLKEGMTFAEFARETTKQYYGASGLQSSRYYLSVDPGKAYSALCSITI

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G63290 2-oxoglutarate (2OG) and Fe(II... Lus10004080
[exp]
0 1
AT4G26910 Dihydrolipoamide succinyltrans... Lus10043117
[exp]
5.1 0.7368
AT5G65670 AUX_IAA IAA9 indole-3-acetic acid inducible... Lus10019241
[exp]
11.6 0.7233
AT5G48450 SKS3 SKU5 similar 3 (.1) Lus10038239
[exp]
13.3 0.7439
AT2G33490 hydroxyproline-rich glycoprote... Lus10001808
[exp]
15.5 0.6741
AT2G01480 O-fucosyltransferase family pr... Lus10013460
[exp]
15.6 0.6588
AT2G33840 Tyrosyl-tRNA synthetase, class... Lus10029613
[exp]
22.6 0.6915
AT1G67690 Zincin-like metalloproteases f... Lus10037058
[exp]
22.9 0.7220
AT5G42240 SCPL42 serine carboxypeptidase-like 4... Lus10018924
[exp]
27.2 0.7083
AT3G55610 P5CS2 delta 1-pyrroline-5-carboxylat... Lus10001019
[exp]
33.7 0.7001
AT3G16857 GARP ARR1 response regulator 1 (.1.2) Lus10037719
[exp]
37.1 0.6579

Lus10004080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.