Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63370 891 / 0 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 604 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 598 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 578 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 569 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G18750 556 / 0 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 550 / 5e-180 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 536 / 5e-178 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 525 / 5e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 524 / 6e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014707 [exp] 1818 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 627 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 619 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 602 / 0 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 584 / 0 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 581 / 0 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 570 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013578 [exp] 555 / 0 AT1G16480 1036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018978 [exp] 555 / 0 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215500 [exp] 1274 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 636 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 636 / 0 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075800 [exp] 607 / 0 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 602 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 564 / 0 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 562 / 0 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 552 / 0 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 549 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 545 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004081 pacid=23169974 polypeptide=Lus10004081 locus=Lus10004081.g ID=Lus10004081.BGIv1.0 annot-version=v1.0 ATGGCTGCTACGTCTTTCCCGCTATGTAATAACCTCCATACCTCCCCGCCGCCTGCAGTAATGCCGAAACCCCATTCTACACAATCAGTCATTTCTCTTC GCGAGCTATGCAAGCAAGGAAGCCTCAAAGAAGCTTTCCCCTCCTTCACCGCATTGTTGACTCACGATCGTAGCTCACTTCTCGCCAACCCGGACGAGGT TTACGCGCCACTACTTGAGCTCTGTGCCACGAGGAAGGCTTCGTCACAGGGCCGACAGATTCATGCCCATATCCTGAAATCCGGAGTGACGACGACGTCG GACCCTGCTTTCTTGAGCACGAAGCTAGTGTTTATGTACGGAAAGTGCGGGTACATCTCTGATTCACAGAAGGTGTTCGACGAAATGCCTGAGAGAACCG TCTTCACTTGGAATGCTATCATGGGTGCTTACGTGTCGAATGGACAACCTCTAGAAGCTCTTCGCTTGTATAGAGAGATGCTGGGTTTTGGTTCTTGTCC TGATTCTTGTACTTTTCCTTGTGTTTTGAAAGCATGTGGAGCAGTGGGAGATCTTCGTTATGGGGCGGAAGTTCATGGACTCACCATCAAAAGTGGGTGT GCTTCTGTACCGTTTGTTGCTAATGCTATTGTTGCTATGTATGCCAAGTGCAAGGATTTGGATAGCGCAAGGAAATTGTTTGACAGGGTGAATGGAAGAG ATGATGATGTGTTGTGGAACTCGATGATTTCTGCATATTCTGAAAATTTGCAGTACCTTGAGGCCTTGGAAATTCTTAGAAAAATGAGGATGGTTGGTGT TTCTCCTAGCACTTACACATTTGTTGCTGCTCTTCAAGCTTGTCAGGACTCTTCTAGTAAACTAGGAAGGGAAATCCACGCTGCTACGTTGAGATCAAGT CATTTTCTCGACGTCTATGTGGCAAATGCGCTGATAGCTATGTATGTGAGGCAGGGGATGATGGTTGAGGCTGCCAGAATTTTCAGTAAGGTAGATGGAA AGGACAATGTCACATGGAATTCCTTGCTTAATGGTTTTATCCAGAATGGTCTATTCGCTGAAGCTTTGAAATTCTTCCATGATTTGCTTGATTCTGGTAT TAAACCTGATGTGGTATCTCTAACAAGCATCATTGGAGCATGTGGAAGGTTGGGTTATTTGTTAAATGGAAAAGAAAGTCATGCTTACGCTATAAGGATG GGGTTTAGTTCTCACTTGCATGTTGGAAACACAATTATTGATCTTTATAACAAGTGTTCTTTTGTGAGTTACATGGGCCGTACTTTTAGGATGATGCCTG ACAAAGATATCATTTCCTGGACGACAATTGTAGCTGGCTATGCTCAGAACAGTCGCCATCTAGAGGCCTTGGAATTGACCAGACAAGCGCAAATGGAAGG GATGTGCGCTGATGCAATGATGATTGGTAGCATTCTACTGGCTTGCAGTGGATTGAAATACTTTTCAAAAGTAAAAGAAGTTCATGGCTATATGATAAGG CACAGTCTAACTGATCATGAGCTGAGAAATACTTTGATTGACGTGTATGGGGAATGTCGACAACTTGATTATGCTGCTCGAGCATTCCAGTTAATTGAAG ACAAAGATGTTATATCTTGGACGAGCATGATTTCTTCATGTGTCAATAATGGTGACGCAGATGAAGCTCTTGAAGTTTTCCACTTGATGAGTGAGACAGG AGTGCAACCTGATTCTATTACCCTGGTGAGCCTACTCTCTGCCGTTACTAACTTATCATGCTTGAACAAAGGGAAAGAAATCCATGGTTTTATAACAAGG AAGGTCTTTCTGTTAGAAGGTTCGATGGCAAACTCACTTGTTGATATGTATGCTCGTTGTGGGAGTCTAGAGAATGCATGCGAGGTCTTTAGTTGTATAA GGAATAAAAATCTTGTTACATGGACTACTATGATCAATGCATGTGGAATGCATGGGAAAGGCCAAGAAGCAGTTGAACTATTCGGTAGAATGGAGGATCA AAAACTGATCCCAGATCATATTACCTTCTTGACACTTCTTTATGCATGTAGTCATTCAGGATTGATTGATGATGGTAAAAGGTTTCTTGAACTTATGAAA TACAAGTATCAACTAGAGCCCTGGCAGGAACATTATGCTTGTCTGGTCGATCTTTTGGGTCGTGCAAACCGCTTGGAAGAGGCTTTTGAATTTGTCACGG GCATGAAAATTGAACCCGAACCTGAAGTTTGGTGTGCCCTCTTAGCTGCTTGTCAAGTTCACTCCAATAAGGAACTTGGAGAAAAAGTGGCGCAGAAGCT TTTGGAGTCGAACACAGAAAATCCAGGTAATTATGTGTTAGTATCCAATTTGTTTGCTGCTGAAAGTCGTTGGAAAGATGTTCGAGCAGTGAGAATGCGA ATGAAAGCTGGTGGGTTGAAGAAAAGTCCAGGATGTAGTTGGATGGAGGTAGGCAATAAGGTTCATACATTCATTGCTAGAGACAAGTCCCACCCCGATT CTCGTAAGATTTATAAAAAATTGGCTGACATTACTCAGAAGTTGGAGAGTGAAGGAGGCTATGTGGCCCAGACAAATTTAGTCTTGCATAATGTAGGGCA GCAAGAGAAAGTACAGATTCTGCATGGTCATAGTGAACGACTGGCCATAGCTTATGGTTTGTTAAGCACTTCTGAGGGCACCCCAATTCGGATCACAAAG AACCTTAGGATATGTGATGATTGCCATGATTTCTGTAGATTAGTATCAGAATTGTATGATCGTACTCTGGTAATCAGGGATGCCAGCAGATTTCATCATT TTCAGGATGGTGTCTGCTCTTGTGCCGATTTCTGGTGA
AA sequence Show only first row Show all	>Lus10004081 pacid=23169974 polypeptide=Lus10004081 locus=Lus10004081.g ID=Lus10004081.BGIv1.0 annot-version=v1.0 MAATSFPLCNNLHTSPPPAVMPKPHSTQSVISLRELCKQGSLKEAFPSFTALLTHDRSSLLANPDEVYAPLLELCATRKASSQGRQIHAHILKSGVTTTS DPAFLSTKLVFMYGKCGYISDSQKVFDEMPERTVFTWNAIMGAYVSNGQPLEALRLYREMLGFGSCPDSCTFPCVLKACGAVGDLRYGAEVHGLTIKSGC ASVPFVANAIVAMYAKCKDLDSARKLFDRVNGRDDDVLWNSMISAYSENLQYLEALEILRKMRMVGVSPSTYTFVAALQACQDSSSKLGREIHAATLRSS HFLDVYVANALIAMYVRQGMMVEAARIFSKVDGKDNVTWNSLLNGFIQNGLFAEALKFFHDLLDSGIKPDVVSLTSIIGACGRLGYLLNGKESHAYAIRM GFSSHLHVGNTIIDLYNKCSFVSYMGRTFRMMPDKDIISWTTIVAGYAQNSRHLEALELTRQAQMEGMCADAMMIGSILLACSGLKYFSKVKEVHGYMIR HSLTDHELRNTLIDVYGECRQLDYAARAFQLIEDKDVISWTSMISSCVNNGDADEALEVFHLMSETGVQPDSITLVSLLSAVTNLSCLNKGKEIHGFITR KVFLLEGSMANSLVDMYARCGSLENACEVFSCIRNKNLVTWTTMINACGMHGKGQEAVELFGRMEDQKLIPDHITFLTLLYACSHSGLIDDGKRFLELMK YKYQLEPWQEHYACLVDLLGRANRLEEAFEFVTGMKIEPEPEVWCALLAACQVHSNKELGEKVAQKLLESNTENPGNYVLVSNLFAAESRWKDVRAVRMR MKAGGLKKSPGCSWMEVGNKVHTFIARDKSHPDSRKIYKKLADITQKLESEGGYVAQTNLVLHNVGQQEKVQILHGHSERLAIAYGLLSTSEGTPIRITK NLRICDDCHDFCRLVSELYDRTLVIRDASRFHHFQDGVCSCADFW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10004081 [exp]	0	1
AT1G74600		OTP87	organelle transcript processin...		Lus10024220 [exp]	1.7	0.7757
AT1G06710			Tetratricopeptide repeat (TPR)...		Lus10026747 [exp]	7.5	0.7564
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10037799 [exp]	7.7	0.7840
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10019891 [exp]	17.2	0.7280
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Lus10038352 [exp]	18.5	0.7708
AT4G38120			ARM repeat superfamily protein...		Lus10033267 [exp]	19.3	0.7445
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031169 [exp]	20.8	0.7777
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	21.2	0.7736
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10019735 [exp]	28.6	0.7499
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10022401 [exp]	28.9	0.7718

Compare expression of checked genes

Lus10004081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.