Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25440 146 / 8e-43 C3HZnF ZFWD1 zinc finger WD40 repeat protein 1 (.1) AT5G51980 140 / 2e-40 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G40880 112 / 5e-30 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1) AT5G49200 108 / 1e-28 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT2G26490 45 / 6e-06 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032062 [exp] 207 / 3e-67 AT4G25440 212 / 3e-65 zinc finger WD40 repeat protein 1 (.1) Lus10032066 [exp] 207 / 2e-66 AT4G25440 343 / 5e-115 zinc finger WD40 repeat protein 1 (.1) Lus10014598 [exp] 200 / 3e-65 AT4G25440 134 / 2e-36 zinc finger WD40 repeat protein 1 (.1) Lus10014595 [exp] 209 / 2e-64 AT5G14250 445 / 3e-150 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10021656 [exp] 199 / 2e-62 AT4G25440 329 / 9e-109 zinc finger WD40 repeat protein 1 (.1) Lus10014612 [exp] 192 / 5e-62 AT5G40880 131 / 3e-35 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1) Lus10001652 [exp] 177 / 2e-57 AT5G51980 192 / 2e-59 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021640 [exp] 172 / 3e-55 AT4G25440 185 / 7e-57 zinc finger WD40 repeat protein 1 (.1) Lus10021655 [exp] 176 / 1e-54 AT4G25440 169 / 3e-48 zinc finger WD40 repeat protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G137200 [exp] 150 / 3e-44 AT4G25440 587 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.012G134800 [exp] 149 / 5e-44 AT4G25440 600 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.014G077800 [exp] 145 / 8e-42 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.009G109500 [exp] 42 / 4e-05 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 42 / 7e-05 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G079600 [exp] 40 / 0.0002 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.002G130400 [exp] 40 / 0.0003 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 40 / 0.0003 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G023900 [exp] 39 / 0.0007 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10004085 pacid=23169973 polypeptide=Lus10004085 locus=Lus10004085.g ID=Lus10004085.BGIv1.0 annot-version=v1.0 ATGGATGGGGCAATCAATGTCTGGGATTGCAGTACTTTTCAAAAGCTAGGGACTTTCAAGGAGCATGATGAAGCAGTGATATCTCTGGTCTGTTCTTCGA GCTACCGGATATCCTGCTCACTGGATCAGAAGATCAAGGTATGGAGCTGCAATGAAGAAGGAAGGCTTGAAGCTATGTATACTCATGAAGAAGAAGATGG TGCTCTGGCCTTGTGTGGAGTAGTGGTGAATGGGAAGACGTTGTTGTTATGCTCATGGAACGATGATTCGGTTGGATTGTATGAGCTGCCATCCTTTGCT GAGAAGGGGAGAATGTACTTGAAAGGTGAAGTAAGGAGCATTGGAGAAGGTCCAGGTGGACTGGTTTTCACTGGAGATGCTTCTGGCATGCTTACTGTAT GGCAACTGACAGAAGAAGCTAAATTGGGGCAGTAG
AA sequence Show only first row Show all	>Lus10004085 pacid=23169973 polypeptide=Lus10004085 locus=Lus10004085.g ID=Lus10004085.BGIv1.0 annot-version=v1.0 MDGAINVWDCSTFQKLGTFKEHDEAVISLVCSSSYRISCSLDQKIKVWSCNEEGRLEAMYTHEEEDGALALCGVVVNGKTLLLCSWNDDSVGLYELPSFA EKGRMYLKGEVRSIGEGPGGLVFTGDASGMLTVWQLTEEAKLGQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10004085 [exp]	0	1
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042936 [exp]	7.5	0.7596
AT4G17010			unknown protein		Lus10006582 [exp]	14.0	0.7495
AT1G76200			unknown protein		Lus10016001 [exp]	17.4	0.7589
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Lus10041562 [exp]	21.8	0.7110
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10032272 [exp]	22.0	0.7252
AT2G04900			unknown protein		Lus10001166 [exp]	23.7	0.7572
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10029208 [exp]	24.3	0.7015
AT3G61350		SKIP4	SKP1 interacting partner 4 (.1...		Lus10017821 [exp]	33.5	0.7210
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10023016 [exp]	44.6	0.7376
AT3G25210			Tetratricopeptide repeat (TPR)...		Lus10038215 [exp]	50.3	0.7311

Compare expression of checked genes

Lus10004085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.