Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63380 1006 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G22910 944 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT5G57110 804 / 0 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT4G29900 793 / 0 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT3G21180 776 / 0 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) AT1G27770 640 / 0 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT3G57330 622 / 0 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT4G37640 615 / 0 ACA2 calcium ATPase 2 (.1) AT2G22950 607 / 0 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT2G41560 604 / 0 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034840 [exp] 784 / 0 AT3G21180 1647 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Lus10001638 [exp] 781 / 0 AT4G29900 1599 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10001428 [exp] 780 / 0 AT4G29900 1593 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10033386 [exp] 772 / 0 AT3G21180 1615 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Lus10016366 [exp] 616 / 0 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10011522 [exp] 615 / 0 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1) Lus10018687 [exp] 610 / 0 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10042040 [exp] 602 / 0 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10035439 [exp] 601 / 0 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215600 [exp] 1056 / 0 AT3G63380 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.002G047500 [exp] 1050 / 0 AT3G63380 1411 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G159100 [exp] 991 / 0 AT3G22910 1340 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G081100 [exp] 978 / 0 AT3G22910 1337 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.013G040201 [exp] 951 / 0 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.005G052700 [exp] 936 / 0 AT3G63380 1233 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.006G072900 [exp] 798 / 0 AT4G29900 1549 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.018G139800 [exp] 791 / 0 AT4G29900 1566 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.010G250800 [exp] 790 / 0 AT3G21180 1575 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.008G008100 [exp] 778 / 0 AT3G21180 1562 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00689 [flax] [poplar] Cation_ATPase_C Cation transporting ATPase, C-terminus CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10004086 pacid=23169966 polypeptide=Lus10004086 locus=Lus10004086.g ID=Lus10004086.BGIv1.0 annot-version=v1.0 ATGACCGGAGAGAGCGATCATGTCGAAGTTGGTGATTCGATCGAGAATCCTTTCTTGTTCTCCGGCTGTAAAGTTGCAAATGGATACGGCAGAATGTTGG TGACATCCGTGGGGATGAACACTTCCTGGGGGGAAATGATGAGCTCGATTTCATCTAGCGAATCGAACGAATCGACACCGTTGCAAGCTAGGCTTGACAA GCTGACGTCTTCAATTGGGAAAGTAGGACTTGCTGTTGCTTTCCTCGTTTTGGTTGTCATGCTAGTCCGTTACTTCACCGGCCACACCTCCGAGGAACGA TTCGAAGCTGGAAGGACGAAAACGGGAGATGTTCTCGATGCGGTTGTGAAGATCGTTGCAGCTGGAGTCACTATAGTTGTGGTGGCCATTCCTGAAGGGC TGCCATTGGCAGTTACACTAACGTTGGCCTATTCGATGAAGCGAATGATGGCTGATCAATCAATGGTTCGCAAGCTGTCAGCTTGCGAAACGATGGGATC AGCCACCGTAGTATGCACTGACAAGACCGGAACTTTGACTCTGAATCAAATGCAGGTCACCAAGTTATCTCTAGGGTTACACCTCATTGACCGAGTTCAA GAGATTTCCAAACAGGTTGTCGATTTGCTCAAGCAAGGAATCGGCTTGAACACGACTGGAAGTGTTTACAGAACATCATCAGAATCGAAGCTGGAAGTAT CAGGAAGTCCAACTGAGAAGGCAATTCTGTCTTGGGGAGTTACTGAATTGGGTTTGGACATGGAAAAGCTGGGGAAAATCTTTGATGTTCTGCAAGTCGA GACATTTAACTCAGAAAAGAAAAGGAGTGGAGTTTGTGTTAAGAAAGATGAAATCCTGGGACAGGTTCATTGGAAAGGAGCTGCGGAGATGATCGCAGCG ATGTGTTCGAGTTATTATGAAAGTGACGGGACGGTGAAGTCTCTAGACGATGAAGCAAGAAGCAGAATTGACAGCATAATCCAAGGAATGGCAGCTAGTA GCTTAAGGTGCATCGCTTTTGGTTACAAGGAAGTACCAATTGTGGGAATGGATGGAAAGATGCCTGAAGATGGTTTGACATTACTCGGGATAGTCGGTTT GAAGGATCCGTGTCGTCCAGGAGCGAAAGAGGCAGTCGAGCTATGCAAATCGGCAGGAGTTCAGGTGAAAATGATAACGGGAGACAATGTGTTCACAGCA AGAGCCATAGCAACCGAATGTGGAATACTCGACGTGGAAAACGATCCACAATCAGTTGTCGAAGGTGTCGAGTTTCGAAACTACAGCGATTCGGAAAGAA TGGAAAGAGTCGACCGGATTTTGGTCATGGCCAGGTCATCGCCGTTCGACAAACTACTAATGGTACAATGCTTGAAAGCGAAGGGTCATGTCGTAGCAGT GACCGGAGATGGCACGAACGATGCACCAGCGATGAAAGAGGCCGATGTAGGATTATCGATGGGGATACAAGGCACCGAGGTTGCGAAGGAGAGCTCAGAC ATTGTAATTCTGGACGATAATTTCGCATCGGTTGCGACGGTTTTGAAATGGGGGAGGTGTGTTTACAACAACATACAAAAGTTCATCCAGTTTCAGCTGA CTGTGAACGTTGCAGCACTTGTGATCAACTTCATAGCAGCAGTATCAGCTGGCGAGGTTCCGTTAACAGCGGTCCAGCTCTTGTGGGTCAATCTGATCAT GGACACGTTGGGAGCTCTCGCCCTCGCTACAGATCGTCCCACGGATGAGCTCATGAAGAGCCCTCCCGTAGGAAGATCGCAGCCGTTGATCACCAACATC ATGTGGAGGAACCTGATTGCTCAAGCTGCTTACCAGATTGCAGTGCTGTTGGTGTTGGAATTTGAAGGGGAGTCGATCTTTAACGTGAGCAACGAGGTGA AGAACACGTTGGTCTTCAACACGTTCGTGCTCTGCCAAGTGTTCAACGAGTTCAATTCGAGGAAGTTGGAGAAGATGAACGTCTTCGAAGGAGTGTTGCA GAATCGGCTGTTTGTTGGGATCATCGGGGTGACGATTGTTCTTCAGGTAGTGATGGTTGAGTTCTTGGGTAAATTTGCTGACACGGAAAGGCTGAATGGT TGGCAATGGGGAACTTGCTTGTTGATTGCAGCAGTTTCATGGCCGATTGGGTTTTGTGTGAAGTTGATGCCAGTTCCGGAGAAGCCATTCTTTGGTTACC TAAAGAGTCCAGCTTCCATGTTCAAGAAGATGCTTGCATCCAGAAGAAAGCCACCATCGTCTTCAGCATCAAGCAACGTGTGA
AA sequence Show only first row Show all	>Lus10004086 pacid=23169966 polypeptide=Lus10004086 locus=Lus10004086.g ID=Lus10004086.BGIv1.0 annot-version=v1.0 MTGESDHVEVGDSIENPFLFSGCKVANGYGRMLVTSVGMNTSWGEMMSSISSSESNESTPLQARLDKLTSSIGKVGLAVAFLVLVVMLVRYFTGHTSEER FEAGRTKTGDVLDAVVKIVAAGVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQSMVRKLSACETMGSATVVCTDKTGTLTLNQMQVTKLSLGLHLIDRVQ EISKQVVDLLKQGIGLNTTGSVYRTSSESKLEVSGSPTEKAILSWGVTELGLDMEKLGKIFDVLQVETFNSEKKRSGVCVKKDEILGQVHWKGAAEMIAA MCSSYYESDGTVKSLDDEARSRIDSIIQGMAASSLRCIAFGYKEVPIVGMDGKMPEDGLTLLGIVGLKDPCRPGAKEAVELCKSAGVQVKMITGDNVFTA RAIATECGILDVENDPQSVVEGVEFRNYSDSERMERVDRILVMARSSPFDKLLMVQCLKAKGHVVAVTGDGTNDAPAMKEADVGLSMGIQGTEVAKESSD IVILDDNFASVATVLKWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSAGEVPLTAVQLLWVNLIMDTLGALALATDRPTDELMKSPPVGRSQPLITNI MWRNLIAQAAYQIAVLLVLEFEGESIFNVSNEVKNTLVFNTFVLCQVFNEFNSRKLEKMNVFEGVLQNRLFVGIIGVTIVLQVVMVEFLGKFADTERLNG WQWGTCLLIAAVSWPIGFCVKLMPVPEKPFFGYLKSPASMFKKMLASRRKPPSSSASSNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63380			ATPase E1-E2 type family prote...		Lus10004086 [exp]	0	1
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10029517 [exp]	2.4	0.7552
AT3G63380			ATPase E1-E2 type family prote...		Lus10004087 [exp]	3.2	0.8216
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10027604 [exp]	9.5	0.7638
AT5G24320			Transducin/WD40 repeat-like su...		Lus10023033 [exp]	13.4	0.7195
AT5G17680			disease resistance protein (TI...		Lus10014829 [exp]	17.1	0.7798
AT4G19410			Pectinacetylesterase family pr...		Lus10034762 [exp]	17.4	0.7226
AT1G27180			disease resistance protein (TI...		Lus10004727 [exp]	17.9	0.7701
AT2G36330			Uncharacterised protein family...		Lus10042123 [exp]	18.7	0.7389
AT5G36930			Disease resistance protein (TI...		Lus10027184 [exp]	26.1	0.7689
AT1G21400			Thiamin diphosphate-binding fo...		Lus10000772 [exp]	32.6	0.7198

Compare expression of checked genes

Lus10004086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.