Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63380 97 / 2e-23 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G22910 76 / 6e-16 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT5G57110 65 / 4e-12 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT3G21180 57 / 2e-09 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) AT4G29900 53 / 3e-08 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT1G27770 43 / 6e-05 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034840 [exp] 61 / 1e-10 AT3G21180 1647 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Lus10033386 [exp] 59 / 4e-10 AT3G21180 1615 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Lus10001428 [exp] 54 / 2e-08 AT4G29900 1593 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10001638 [exp] 54 / 2e-08 AT4G29900 1599 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10016366 [exp] 53 / 5e-08 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10018045 [exp] 48 / 2e-06 AT3G57330 816 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10042040 [exp] 46 / 9e-06 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215600 [exp] 128 / 2e-34 AT3G63380 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.002G047500 [exp] 119 / 5e-31 AT3G63380 1411 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.005G052700 [exp] 87 / 1e-19 AT3G63380 1233 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G159100 [exp] 86 / 3e-19 AT3G22910 1340 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.013G040201 [exp] 84 / 9e-19 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.013G038600 [exp] 82 / 5e-18 AT3G63380 769 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G081100 [exp] 79 / 5e-17 AT3G22910 1337 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.013G038400 [exp] 74 / 2e-15 AT3G63380 759 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.018G139900 [exp] 63 / 2e-11 AT5G57110 1210 / 0.0 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) Potri.008G008100 [exp] 60 / 2e-10 AT3G21180 1562 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus
Representative CDS sequence Show only first row Show all	>Lus10004087 pacid=23169975 polypeptide=Lus10004087 locus=Lus10004087.g ID=Lus10004087.BGIv1.0 annot-version=v1.0 ATGAACTCAGATTTTCCACCCTCACCTGGAAAAACATTCCTCAGGATTCGAGCTCACCAGAGATGGCGCGTCGCCTACAGCGCAATCCGCTCGATAAGGG CAATGCTCTCCCTCGTCAGAGACATTGTCAGTGTTCATCACCCTCTTCCTTACTCCCTCCTCCTCGAAATCGAACCACCAACCCAAAAACAGAAGATAAA AACCCCTGAAGCATTCGAACTGGCAGAGATGGTTAAAGACAAGGACTTGGTCAGTCTCGGAAGCCTCGGAGGAGTCCGAGGGGTTTCTGCTTCTCTGGGA ACAGATTCGCAATCTGGTGTAACAACTAGTGATGTCGAGAAAAGGAAGGAGATGTTCGGATCGAACACTTATCCGAAAGGGCCTTCGAAAGGGTTGATGT CTTTCATGGTGGAAGCTGTTAATGACACTACTATTCTGATCTTGTTAGCTTGTGCTGCTCTGTCTCTAGGGTTTGGTATCAAGCAGGACGGTCCGAAAGA AGGATGGTACGAAGGCGGGAGCATCATTGTCGCGGTGTTGCTTGTCGTGATAATCTCCGCTTTGAGTAATTACAGGCAAGTAGTGACGGATCTTGGTGGA GCCTAG
AA sequence Show only first row Show all	>Lus10004087 pacid=23169975 polypeptide=Lus10004087 locus=Lus10004087.g ID=Lus10004087.BGIv1.0 annot-version=v1.0 MNSDFPPSPGKTFLRIRAHQRWRVAYSAIRSIRAMLSLVRDIVSVHHPLPYSLLLEIEPPTQKQKIKTPEAFELAEMVKDKDLVSLGSLGGVRGVSASLG TDSQSGVTTSDVEKRKEMFGSNTYPKGPSKGLMSFMVEAVNDTTILILLACAALSLGFGIKQDGPKEGWYEGGSIIVAVLLVVIISALSNYRQVVTDLGG A

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63380			ATPase E1-E2 type family prote...		Lus10004087 [exp]	0	1
AT1G12630	AP2_ERF		Integrase-type DNA-binding sup...		Lus10027413 [exp]	2.6	0.8854
AT3G63380			ATPase E1-E2 type family prote...		Lus10004086 [exp]	3.2	0.8216
					Lus10024939 [exp]	4.2	0.8297
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10001686 [exp]	4.2	0.8839
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006594 [exp]	5.7	0.8737
AT1G21400			Thiamin diphosphate-binding fo...		Lus10000772 [exp]	5.9	0.8676
AT2G04865			Aminotransferase-like, plant m...		Lus10032799 [exp]	6.2	0.8140
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006593 [exp]	6.3	0.8707
AT2G36330			Uncharacterised protein family...		Lus10042123 [exp]	8.7	0.8041
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10029517 [exp]	11.0	0.7166

Compare expression of checked genes

Lus10004087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.