Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14640 159 / 1e-50 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT3G43810 154 / 7e-49 CAM7 calmodulin 7 (.1) AT3G22930 154 / 1e-48 CML11 calmodulin-like 11 (.1) AT2G41110 153 / 2e-48 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT2G27030 153 / 2e-48 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT3G56800 153 / 2e-48 ACAM-3, CAM3 calmodulin 3 (.1) AT5G21274 153 / 2e-48 ACAM-6, CAM6 calmodulin 6 (.1) AT5G37780 152 / 3e-48 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 152 / 3e-48 ACAM-4, CAM4 calmodulin 4 (.1.2) AT3G51920 130 / 1e-39 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014709 [exp] 283 / 6e-100 AT4G14640 162 / 4e-52 calmodulin-like 8, calmodulin 8 (.1) Lus10014708 [exp] 281 / 4e-99 AT4G14640 163 / 2e-52 calmodulin-like 8, calmodulin 8 (.1) Lus10024830 [exp] 185 / 4e-61 AT4G14640 176 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10039391 [exp] 165 / 4e-53 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10041288 [exp] 154 / 8e-49 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 154 / 8e-49 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 154 / 8e-49 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10027283 [exp] 154 / 8e-49 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10009176 [exp] 145 / 2e-45 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215700 [exp] 182 / 6e-60 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1) Potri.005G052800 [exp] 166 / 2e-53 AT4G14640 228 / 7e-78 calmodulin-like 8, calmodulin 8 (.1) Potri.002G047300 [exp] 164 / 5e-52 AT3G22930 171 / 3e-54 calmodulin-like 11 (.1) Potri.010G080900 [exp] 161 / 1e-51 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.012G041000 [exp] 155 / 2e-49 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.001G222200 [exp] 156 / 4e-49 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.008G159300 [exp] 154 / 7e-49 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.016G024700 [exp] 154 / 7e-49 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 154 / 7e-49 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.006G026700 [exp] 154 / 7e-49 AT3G43810 300 / 2e-106 calmodulin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10004088 pacid=23169969 polypeptide=Lus10004088 locus=Lus10004088.g ID=Lus10004088.BGIv1.0 annot-version=v1.0 ATGAACAACGCCGGAGCAATATTGGAGCTGACAGAAGACCAGATAGACGAGTTCCGAAAGGCCTTCAGTTTGATCGACAAGAACGGCGATGGTTTGATTA CCAAGGAGGAACTCGCGATGGTGATCCAGTCGACGGAGATTCACGACTTGATATCAGAAGTTGACTTGCTCGGCGACGGGGCCATGGATTTCGACGAGTT CTTGACCGTCATGACTAGGAAAATGCAGGAAAATGTTAGGGATGAACTGAAAGAAGCTTTCAAAGTGTTTGACAGAGATCAGGACGGCTTCATTTCTCCC ACGGACTTAAGGCAGGTGATGATAAATATGGGGGAGAGGCTGACGGAGGAAGAAGCAGAGCAAATGATACGAGAGGCTGATTTCGACGGTGACGGCAGAG TTAGTTACCACGATTTCACCAACAAGATGACCGTTTGTTAA
AA sequence Show only first row Show all	>Lus10004088 pacid=23169969 polypeptide=Lus10004088 locus=Lus10004088.g ID=Lus10004088.BGIv1.0 annot-version=v1.0 MNNAGAILELTEDQIDEFRKAFSLIDKNGDGLITKEELAMVIQSTEIHDLISEVDLLGDGAMDFDEFLTVMTRKMQENVRDELKEAFKVFDRDQDGFISP TDLRQVMINMGERLTEEEAEQMIREADFDGDGRVSYHDFTNKMTVC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10004088 [exp]	0	1
AT3G03773			HSP20-like chaperones superfam...		Lus10002623 [exp]	1.0	0.9176
AT1G80100		AHP6	histidine phosphotransfer prot...		Lus10023127 [exp]	2.8	0.8900
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10032746 [exp]	4.2	0.9089
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10005764 [exp]	4.2	0.8909
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10037178 [exp]	5.7	0.9143
AT2G12646			PLATZ transcription factor fam...		Lus10039989 [exp]	11.0	0.8993
AT4G32175			PNAS-3 related (.1)		Lus10042121 [exp]	12.6	0.8784
AT1G44970			Peroxidase superfamily protein...		Lus10010634 [exp]	18.2	0.8873
AT2G30270			Protein of unknown function (D...		Lus10026421 [exp]	20.2	0.8333
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10011329 [exp]	21.5	0.8609

Compare expression of checked genes

Lus10004088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.