Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77670 682 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 186 / 4e-54 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) AT5G36160 122 / 2e-30 Tyrosine transaminase family protein (.1) AT2G20610 112 / 5e-27 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT5G53970 108 / 7e-26 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT4G28420 109 / 8e-26 Tyrosine transaminase family protein (.1.2) AT4G28410 107 / 3e-25 Tyrosine transaminase family protein (.1) AT2G24850 106 / 8e-25 TAT3 tyrosine aminotransferase 3 (.1) AT4G23590 94 / 2e-20 Tyrosine transaminase family protein (.1) AT4G23600 91 / 1e-19 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014710 [exp] 747 / 0 AT1G77670 680 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10018962 [exp] 276 / 2e-88 AT1G77670 289 / 2e-93 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10032388 [exp] 191 / 2e-55 AT2G22250 681 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10023080 [exp] 190 / 6e-55 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10033820 [exp] 173 / 1e-49 AT1G77670 172 / 2e-49 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10017704 [exp] 122 / 2e-30 AT5G53970 508 / 4e-180 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10033659 [exp] 113 / 3e-27 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10017703 [exp] 113 / 4e-27 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10039861 [exp] 112 / 1e-26 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G175400 [exp] 699 / 0 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G086000 [exp] 687 / 0 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G175600 [exp] 401 / 8e-141 AT1G77670 395 / 1e-138 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.014G124100 [exp] 281 / 7e-91 AT1G77670 289 / 6e-94 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G079200 [exp] 190 / 6e-55 AT2G22250 649 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.007G088426 [exp] 188 / 2e-54 AT2G22250 643 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.017G014200 [exp] 110 / 2e-26 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G013800 [exp] 109 / 5e-26 AT5G36160 520 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 109 / 5e-26 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 108 / 1e-25 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10004089 pacid=23169972 polypeptide=Lus10004089 locus=Lus10004089.g ID=Lus10004089.BGIv1.0 annot-version=v1.0 ATGCATCTGGACACTTTCTCTTCTTCTACTGTTAATGTTATGCCAACATCACGCCTCTCCTCCTTTCTCCTTAAGAATCCCTCTCCTTTCCTTTTCTCCT CCTCCCCACTCCGCCACCATTCCTGTCTCGCTCCTCCGCCGCCGCCGCGAGTTTCTCTCATGACCGCCCTATCCTCCTCCCTCTCCGCCGCTGCTGCCGC CGCCGCTGAAAAATCCGATCACTCCCAACATCCAATACAGATGAGCATGCTAGCTATCAAGCACGGAGCAATCAATCTTGGTCAAGGATTCCCAAACTTC GATGGCCCTGATTTCGTTAAAGAGGCAGCCATTCAAGCCGTCAGGGATGGGAAAAACCAATACGCTCGTGGATTCGGAGTTCCAGATCTCAATGCTGCGA TCTCTGAGCGGTTCAAGAAAGATACAGGGCTAGTGGTAGACCCTGACAAAGAAATCACCGTCACTTCAGGCTGCACGGAAGCCATTGCCGCGACAATGCT GGGATTGATAAACCCCAGCGATGAAGTGATTCTCTTTGCTCCTTTCTACGACTCCTACGAGGCTACGTTGTCCATGGCTGGTGCCAAAGTAAAGTCTATA ACTTTACGGCCTCCGAATTTCTCTGTTCCTTTGGAGGAGTTCAAGTCTGCCATTTCGAAGAATACCCGTGCGGTTCTTATCAACACTCCGCATAACCCAA CCGGGAAGATGTTTACTCGGGATGAACTCGACACCATTGCTTCGTTGTGCATCGAGAATGACGTGCTGGTTTTTAGTGATGAAGTCTATGATAAGCTGGC TTTCGAAGCGGATCATATCTCGATAGCATCTCTTCCCGGAATGTACGAGCGAACTGTGACTTTGAATTCGTTAGGGAAGACTTTCTCGTTGACCGGGTGG AAGATTGGGTGGGCTATAGCTCCTCCTCACTTAACATGGGGAGTGCGTCAGGCACATTCTTACCTCACATTTGCTACGTCGACTCCAATGCAGTCTGCCG CTGCGGTAGCTCTTCGAGCGCCGGATTCGTTCTACGAAGAGCTGAAGAGGGACTACTCGGCGAAGAAGGAGATCCTGGTGAAAGGGTTGAAAGAAGTCGG GTTCGAGGTGTTCCAGTCGAGCGGGACTTACTTTGTTATTGTGGATCATACCCCTTTTGGTCACGAGAATGACGTGGCGTTCTGCGAGTATTTGATTACG GAAGTTGGCGTGGTTGCGATACCGACGAGCGTGTTCTACTTGAACCCGGAAGACGGGAAGAACTTGGTGAGGTTCACATTCTGTAAAGATGAGGAGACGC TGAAGAGTGCGGTGGAGAGGATGAAGGAGAAGCTGAAGCGGAAGTGA
AA sequence Show only first row Show all	>Lus10004089 pacid=23169972 polypeptide=Lus10004089 locus=Lus10004089.g ID=Lus10004089.BGIv1.0 annot-version=v1.0 MHLDTFSSSTVNVMPTSRLSSFLLKNPSPFLFSSSPLRHHSCLAPPPPPRVSLMTALSSSLSAAAAAAAEKSDHSQHPIQMSMLAIKHGAINLGQGFPNF DGPDFVKEAAIQAVRDGKNQYARGFGVPDLNAAISERFKKDTGLVVDPDKEITVTSGCTEAIAATMLGLINPSDEVILFAPFYDSYEATLSMAGAKVKSI TLRPPNFSVPLEEFKSAISKNTRAVLINTPHNPTGKMFTRDELDTIASLCIENDVLVFSDEVYDKLAFEADHISIASLPGMYERTVTLNSLGKTFSLTGW KIGWAIAPPHLTWGVRQAHSYLTFATSTPMQSAAAVALRAPDSFYEELKRDYSAKKEILVKGLKEVGFEVFQSSGTYFVIVDHTPFGHENDVAFCEYLIT EVGVVAIPTSVFYLNPEDGKNLVRFTFCKDEETLKSAVERMKEKLKRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10004089 [exp]	0	1
AT2G20940			Protein of unknown function (D...		Lus10025069 [exp]	2.0	0.9024
AT3G43520			Transmembrane proteins 14C (.1...		Lus10027640 [exp]	2.8	0.9243
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Lus10031983 [exp]	7.2	0.8987
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007488 [exp]	7.5	0.8859
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10040519 [exp]	7.9	0.8915
AT1G31830			Amino acid permease family pro...		Lus10012153 [exp]	9.5	0.8929
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030601 [exp]	10.4	0.8946
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10002533 [exp]	11.0	0.8917
AT5G42060			DEK, chromatin associated prot...		Lus10032409 [exp]	11.2	0.8759
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10029954 [exp]	12.4	0.8904

Compare expression of checked genes

Lus10004089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.