Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22100 465 / 2e-164 RNA cyclase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013351 [exp] 717 / 0 AT5G22100 499 / 9e-178 RNA cyclase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G016000 [exp] 549 / 0 AT5G22100 515 / 0.0 RNA cyclase family protein (.1) Potri.001G216400 [exp] 535 / 0 AT5G22100 473 / 2e-167 RNA cyclase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05189 [flax] [poplar] RTC_insert RNA 3'-terminal phosphate cyclase (RTC), insert domain CL0290 [flax] [poplar] EPT_RTPC PF01137 [flax] [poplar] RTC RNA 3'-terminal phosphate cyclase
Representative CDS sequence Show only first row Show all	>Lus10004092 pacid=23147803 polypeptide=Lus10004092 locus=Lus10004092.g ID=Lus10004092.BGIv1.0 annot-version=v1.0 ATGGGGAAAGTAGAGTACAAGAGGCTGAAAGGCGCCCAAAGCCTTCGCCAGAGGCTTCTCCTCTCGACGCTCTCCGGCACTCCTATTTTCATCGACGGCA TTCGCGACGGCGACAAGTTTCCCGGCCTCCGGAAGCATGAAATCTCCCTCATCCGCCTCTTCGACACAATCACCGACGATTGCAGCTTCGAAATTAACGA CACTGCGACAAAGTTCAAATACAAGCCTGGTGTTGTTATGAGTGGGAAGCGAGTTGTTCATGATTGCGGTGATTGTCGATCGATCGGATACTTCCTGGAG CCGTTGATTGTTCTTGGATTGTTTGGAAAGAAGCCTCTTGAGATTAGGCTCAAAGGGATTACAAATGACTGTAAGGATCCATCTGTCGACACTTTTCGCT CTACTACATTGCCAATCCTAAAGCAATTTGGGGTCCCTACCGAAGGGTTGGACCTCAAAATAGAGAGCCGTGGAGTTCCACCAAATGGTGGAGGAGAAGT TGTTTTATCGATCCCTGTAGTTAAAGCCCTGTCGGCTGTTACCTGGATTGATGAGGGGATGGTTAAAAGGATTAGAGGGTGGGCTTTCTCAGCCAATGTG TCTCCTCAATTTGAGTTTACAATGATCCATGCTGCCCGTGGAATCTTCAATAATCTGCTCCCTGATGTTTATATATTTCCTGATCACAAGTCTGGTGCAA AAGCTGGGAATTCTCCTGGTTATGGGATCTCCTTGGTCGCGGAAACTACTGCTGGCTGCTGCATATCGGCTGATACCACGATTTCTTATGGATGTCGAGA TGATGTTGGTGACATTGACGACGAGAAGAAAGAATTGAAGCCTGCAGATTATGTCGGGGAAGACATTGCCTCTGCTCTTCTCGAAGAGATTGAACAAGGT GGAGTCGTCGATTCAACACATCAGGGTTTTCTGTTCCTTCTATGTGCATTATGCCCTCCGGACATTTCGAAGGTTCGGGTCGGGAAGCTGTCACCCTATG GTATCGAAACTTTGAGGCAGATCAAGGAGTTTCTGGGTGTGGAGTTTAATATTAAACCCGATCCAGCGACGGGGACGGTGATTCTGAAATGTATGGGGTG TGGGTTGAAGAACATTTCCAGAAAGAGCTCGTAA
AA sequence Show only first row Show all	>Lus10004092 pacid=23147803 polypeptide=Lus10004092 locus=Lus10004092.g ID=Lus10004092.BGIv1.0 annot-version=v1.0 MGKVEYKRLKGAQSLRQRLLLSTLSGTPIFIDGIRDGDKFPGLRKHEISLIRLFDTITDDCSFEINDTATKFKYKPGVVMSGKRVVHDCGDCRSIGYFLE PLIVLGLFGKKPLEIRLKGITNDCKDPSVDTFRSTTLPILKQFGVPTEGLDLKIESRGVPPNGGGEVVLSIPVVKALSAVTWIDEGMVKRIRGWAFSANV SPQFEFTMIHAARGIFNNLLPDVYIFPDHKSGAKAGNSPGYGISLVAETTAGCCISADTTISYGCRDDVGDIDDEKKELKPADYVGEDIASALLEEIEQG GVVDSTHQGFLFLLCALCPPDISKVRVGKLSPYGIETLRQIKEFLGVEFNIKPDPATGTVILKCMGCGLKNISRKSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22100			RNA cyclase family protein (.1...		Lus10004092 [exp]	0	1
AT5G22100			RNA cyclase family protein (.1...		Lus10013351 [exp]	1.0	0.9210
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Lus10032381 [exp]	1.4	0.8789
AT4G11160			Translation initiation factor ...		Lus10033933 [exp]	5.5	0.8585
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10012890 [exp]	6.9	0.8676
AT2G20390			unknown protein		Lus10022869 [exp]	9.5	0.8147
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002599 [exp]	9.5	0.8653
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10032172 [exp]	10.2	0.8349
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10037387 [exp]	10.5	0.8266
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10025009 [exp]	10.6	0.8459
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Lus10022870 [exp]	11.0	0.8686

Compare expression of checked genes

Lus10004092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.