Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35930 228 / 3e-73 PUB23 plant U-box 23 (.1) AT3G52450 222 / 6e-71 PUB22 plant U-box 22 (.1) AT3G11840 137 / 5e-38 PUB24 plant U-box 24 (.1) AT3G02840 57 / 1e-09 ARM repeat superfamily protein (.1) AT3G49810 54 / 2e-08 ARM repeat superfamily protein (.1) AT1G49780 52 / 5e-08 PUB26 plant U-box 26 (.1) AT3G19380 52 / 1e-07 PUB25 plant U-box 25 (.1) AT5G11550 44 / 5e-05 ARM repeat superfamily protein (.1) AT5G65920 42 / 0.0003 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013352 [exp] 397 / 2e-142 AT2G35930 212 / 6e-67 plant U-box 23 (.1) Lus10013584 [exp] 255 / 6e-84 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10021267 [exp] 253 / 4e-83 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10029393 [exp] 246 / 2e-80 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10016166 [exp] 239 / 1e-77 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10000800 [exp] 140 / 2e-39 AT3G11840 293 / 7e-95 plant U-box 24 (.1) Lus10008368 [exp] 133 / 9e-37 AT3G11840 284 / 2e-91 plant U-box 24 (.1) Lus10004191 [exp] 134 / 3e-36 AT3G11840 300 / 2e-95 plant U-box 24 (.1) Lus10029395 [exp] 130 / 2e-35 AT3G11840 296 / 8e-96 plant U-box 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G016200 [exp] 271 / 2e-90 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.001G216100 [exp] 267 / 1e-88 AT2G35930 452 / 5e-158 plant U-box 23 (.1) Potri.006G202600 [exp] 249 / 2e-81 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.016G069400 [exp] 244 / 2e-79 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.009G016100 [exp] 168 / 2e-50 AT3G11840 326 / 6e-108 plant U-box 24 (.1) Potri.006G202700 [exp] 160 / 3e-47 AT3G11840 362 / 3e-122 plant U-box 24 (.1) Potri.002G174500 [exp] 158 / 2e-46 AT2G35930 249 / 9e-79 plant U-box 23 (.1) Potri.016G069500 [exp] 153 / 2e-44 AT3G11840 367 / 7e-124 plant U-box 24 (.1) Potri.001G216300 [exp] 151 / 7e-44 AT3G11840 303 / 6e-99 plant U-box 24 (.1) Potri.014G101100 [exp] 150 / 3e-43 AT2G35930 266 / 3e-85 plant U-box 23 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004095 pacid=23147808 polypeptide=Lus10004095 locus=Lus10004095.g ID=Lus10004095.BGIv1.0 annot-version=v1.0 ATGGCGAGATCATCCAACAACAACCAATCCAAAGCCTACGCGATGATTCTCCTCAGATCCGTCTTCCGATTCTCCGATTGCCCGATCCGATTAGTCAACA CCAGATCCGAAATCTTCGCCGAGGTCGTTAGAGTGATGAAGGACCAGATCTCGGATCAGGCGACGAAATCGGCTTTGAAGTTCCTGATCGAGGTCTGTCC GTGGGGGAGGAACCGGATCAAGGCGGTAGAAGGTGGAGCCGTGGGGGCTCTGATCGAGATCCTGATGGAGGAATCTCCGTTAGGAGGGAGCCGGAGGACG GAGGAGATGGCGGTGAGGGCGGTGGAGCTGATGTGCGGGTGCGCAGAAGGGAGGGCGGAGCTGGTGGGGCACGCGGCGGGGATGGCGGTTGTGGCGAAGA AGATACTGCGGGTGAGCCACACGACGACGGAGAGGGCGGTCAGGATATTGTCGGCGGTGAGCAGGTATTCGGCGACGGGGAAAGTGGTGGCGGAGATGCT GGAGGTGGGAATCGTGGCGAAGCTGTGCTTGGTGGTTCAGGTGGACGCCAGCTGGAAGAGCAAAGAGAAGGCGAGGGAGATTCTGAGGAAGCATTGTAGA GCTTGGAGGAACTCGCCGTGCATTCCTTCTCATTTGATTTCTTCTTTTCCGGTCTGA
AA sequence Show only first row Show all	>Lus10004095 pacid=23147808 polypeptide=Lus10004095 locus=Lus10004095.g ID=Lus10004095.BGIv1.0 annot-version=v1.0 MARSSNNNQSKAYAMILLRSVFRFSDCPIRLVNTRSEIFAEVVRVMKDQISDQATKSALKFLIEVCPWGRNRIKAVEGGAVGALIEILMEESPLGGSRRT EEMAVRAVELMCGCAEGRAELVGHAAGMAVVAKKILRVSHTTTERAVRILSAVSRYSATGKVVAEMLEVGIVAKLCLVVQVDASWKSKEKAREILRKHCR AWRNSPCIPSHLISSFPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10004095 [exp]	0	1
AT3G52450		PUB22	plant U-box 22 (.1)		Lus10004096 [exp]	1.0	0.8523
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Lus10023796 [exp]	7.1	0.7957
AT3G23090			TPX2 (targeting protein for Xk...		Lus10022213 [exp]	13.0	0.8051
AT1G15020		QSO2, ATQSOX1	quiescin-sulfhydryl oxidase 1 ...		Lus10034639 [exp]	15.5	0.7855
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10036337 [exp]	36.6	0.7881
AT5G62890			Xanthine/uracil permease famil...		Lus10043460 [exp]	37.5	0.7545
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	37.8	0.7735
AT5G37790			Protein kinase superfamily pro...		Lus10028518 [exp]	40.2	0.7669
AT3G19895			RING/U-box superfamily protein...		Lus10029068 [exp]	40.8	0.7622
AT3G01120		AtCGS1, ATCYS1,...	METHIONINE OVERACCUMULATION 1,...		Lus10005226 [exp]	42.7	0.7822

Compare expression of checked genes

Lus10004095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.