Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52450 95 / 1e-22 PUB22 plant U-box 22 (.1) AT2G35930 91 / 3e-21 PUB23 plant U-box 23 (.1) AT1G49780 81 / 7e-18 PUB26 plant U-box 26 (.1) AT3G19380 81 / 2e-17 PUB25 plant U-box 25 (.1) AT5G09800 79 / 4e-17 ARM repeat superfamily protein (.1) AT3G18710 77 / 2e-16 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) AT5G64660 77 / 2e-16 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT1G66160 77 / 2e-16 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT3G11840 74 / 2e-15 PUB24 plant U-box 24 (.1) AT1G23030 73 / 8e-15 PUB11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029393 [exp] 98 / 1e-23 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10016166 [exp] 94 / 4e-22 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10021267 [exp] 92 / 2e-21 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10013584 [exp] 89 / 2e-20 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10040124 [exp] 82 / 4e-19 AT1G66160 154 / 6e-45 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) Lus10001079 [exp] 85 / 5e-19 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1) Lus10004191 [exp] 84 / 1e-18 AT3G11840 300 / 2e-95 plant U-box 24 (.1) Lus10029395 [exp] 81 / 2e-17 AT3G11840 296 / 8e-96 plant U-box 24 (.1) Lus10043471 [exp] 77 / 2e-16 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G016200 [exp] 108 / 1e-27 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.001G216100 [exp] 106 / 6e-27 AT2G35930 452 / 5e-158 plant U-box 23 (.1) Potri.016G069400 [exp] 94 / 2e-22 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.006G202600 [exp] 91 / 3e-21 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.016G069500 [exp] 85 / 4e-19 AT3G11840 367 / 7e-124 plant U-box 24 (.1) Potri.006G202700 [exp] 85 / 4e-19 AT3G11840 362 / 3e-122 plant U-box 24 (.1) Potri.002G174500 [exp] 84 / 7e-19 AT2G35930 249 / 9e-79 plant U-box 23 (.1) Potri.014G101100 [exp] 84 / 7e-19 AT2G35930 266 / 3e-85 plant U-box 23 (.1) Potri.004G083900 [exp] 83 / 2e-18 AT5G37490 354 / 8e-119 ARM repeat superfamily protein (.1) Potri.015G031000 [exp] 83 / 2e-18 AT5G37490 323 / 9e-107 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10004096 pacid=23147816 polypeptide=Lus10004096 locus=Lus10004096.g ID=Lus10004096.BGIv1.0 annot-version=v1.0 ATGGAGGAGCTTCCTCATTCGTCGGCCGACGACGTCCCCTACCATTTCCTCTGCCCAATCTCCCTTCAGCTAATGTCCGACCCCGTCACCCTCTCCACTG GCATCACCTACGACCGCCACCACATCCACCGCTGGCTCTTCTCCCCCCCCCGCCACACCTGCCCCGTCACCAACCAAATCCTCTCCTTCAAACTCCTCAC CCCTAATCTCACCCTCCGCCGCCTCATCCAATCTTCAACCACCACCGCCGCCGCCACCACCACCACCTCCCCCGACTCTCGCTTCCGCTGTCCGACCCCG TCACCCTCTCCACTGGCATCACCTACGACCGCCACCACATCCACCGCTGGCTCTTCTCCCTCAACCGCCACACCTGCCCCGTCACCAACCAAATCCTCTC CTTCAAACTCCTCACCCCTAATCTCACCCTCCGCCGCCTCACCCATCCCCCCCCCCCCCCCGCCCCCGCCACCACCACCACCTCCCCCGAATCTCGCCTC CGATCTTCTTCTTCACTCACAATCGAAGCCGAGCCGAGCCGAGCCAGCCTCGATTTCCACGCTTCGGTCATCACGAGAAGCCGAGCCGATGAGGATCAGG AAGCCGAGCCGAGTGGGAGTGGTCAATCGGTTGAAGAATCGTTGCAGATTTTGA
AA sequence Show only first row Show all	>Lus10004096 pacid=23147816 polypeptide=Lus10004096 locus=Lus10004096.g ID=Lus10004096.BGIv1.0 annot-version=v1.0 MEELPHSSADDVPYHFLCPISLQLMSDPVTLSTGITYDRHHIHRWLFSPPRHTCPVTNQILSFKLLTPNLTLRRLIQSSTTTAAATTTTSPDSRFRCPTP SPSPLASPTTATTSTAGSSPSTATPAPSPTKSSPSNSSPLISPSAASPIPPPPPPPPPPPPPPNLASDLLLHSQSKPSRAEPASISTLRSSREAEPMRIR KPSRVGVVNRLKNRCRF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52450		PUB22	plant U-box 22 (.1)		Lus10004096 [exp]	0	1
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10004095 [exp]	1.0	0.8523
AT1G15020		QSO2, ATQSOX1	quiescin-sulfhydryl oxidase 1 ...		Lus10034639 [exp]	5.7	0.8282
AT3G61590		HWS, HS	HAWAIIAN SKIRT, Galactose oxid...		Lus10007855 [exp]	17.9	0.7521
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Lus10034800 [exp]	20.2	0.8316
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Lus10018333 [exp]	24.2	0.8078
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009042 [exp]	25.9	0.8084
AT5G37790			Protein kinase superfamily pro...		Lus10028518 [exp]	26.5	0.7971
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10012710 [exp]	34.5	0.8235
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10039324 [exp]	37.1	0.7942
AT1G74030		ENO1	enolase 1 (.1)		Lus10038963 [exp]	38.5	0.8110

Compare expression of checked genes

Lus10004096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.