Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22090 129 / 3e-32 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) AT5G19260 52 / 5e-07 FAF3 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) AT1G54740 42 / 0.0006 Protein of unknown function (DUF3049) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013353 [exp] 717 / 0 AT5G22090 199 / 8e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10042576 [exp] 53 / 2e-07 AT5G19260 95 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10022036 [exp] 51 / 9e-07 AT1G03170 92 / 2e-22 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10014665 [exp] 49 / 3e-06 AT1G03170 76 / 1e-15 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10000655 [exp] 49 / 6e-06 AT5G19260 81 / 7e-18 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10041217 [exp] 48 / 9e-06 AT5G19260 111 / 5e-29 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10025138 [exp] 45 / 4e-05 ND 40 / 5e-04 Lus10035353 [exp] 44 / 0.0001 AT1G54740 93 / 1e-21 Protein of unknown function (DUF3049) (.1) Lus10034061 [exp] 44 / 0.0001 AT5G19260 92 / 2e-21 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G016600 [exp] 238 / 8e-72 AT5G22090 195 / 4e-56 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.001G216000 [exp] 221 / 2e-65 AT5G22090 172 / 1e-47 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.008G149600 [exp] 66 / 1e-11 AT5G19260 95 / 3e-22 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.005G209100 [exp] 61 / 7e-10 AT1G03170 89 / 8e-21 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Potri.002G053400 [exp] 56 / 3e-08 AT4G02810 70 / 9e-14 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) Potri.009G162800 [exp] 50 / 2e-06 AT5G22390 74 / 8e-16 Protein of unknown function (DUF3049) (.1) Potri.005G037600 [exp] 45 / 6e-05 AT1G54740 104 / 7e-26 Protein of unknown function (DUF3049) (.1) Potri.002G092000 [exp] 45 / 6e-05 AT1G22110 130 / 2e-36 structural constituent of ribosome (.1) Potri.005G169900 [exp] 45 / 9e-05 AT1G22110 93 / 1e-21 structural constituent of ribosome (.1) Potri.005G166900 [exp] 44 / 0.0002 AT1G22110 141 / 5e-40 structural constituent of ribosome (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [flax] [poplar] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Lus10004098 pacid=23147817 polypeptide=Lus10004098 locus=Lus10004098.g ID=Lus10004098.BGIv1.0 annot-version=v1.0 ATGTCAGCAGCAACTGCTTTGAGTAGGAGCTTCGGCGGCCTATCTGGACAGCGACAGGGGATTGTTTCCATTCTCGGAAACAACTCTGCCGACCTCGTCA CCACCAAATCCTCATCTCCACTGCCGCCTACTCCGCCGCCATTATCCCTCCGGCGGACTCTCTCCGCTGACATGTCGTCCAACACCTGGCAGATCGCTCG AACAACCGACTTCGCCTCCTCTCCGATGAAGAAAATCGCCTCTACTAACGAACTCCGCCTCCTCCCCAACGAGAAATTCCGGCAAGATCAGCAGCCTCCT GCTCCTACCGGAGGACTGTGCGATACCTGGAGCGCGATTATGTCCGCTCAGAAAGCTAAGGAAGAGGACAAGGATCTGTCTCCTCCTTACATTCATCCTC TAGTTCGTCAATCGAAGAGCTGCTTAAGCGAGAAGAGCCTCGAGATCTGCACCGAGAGCCTCGGATCCGAGACTGGATCCGAAGGATTCTCCTCCAACAC TTCGTCCGAGTCCGGCGATAACGAGAACGAGCAAGAAGAACAGACCAAGGAGGCAGATAAGGCTATCGTAGATCCTCCGCCGACGATGCAGAAGTTCGAC ATGGAAGATCTCCGCATCGCGAAGCTTAACAGTAACAATTTCGTGTCCAACGGTGTTAGCAAGAAGTCGCTCCTCCCTAGGTCGTTTCCTCCGCCAATTC CTTCACTGGCTCACGGCGCCGCCGCGACGGAGACTTTGCATATGAGGCCGCACCGTGACAACGGTAGGCTCGTTCTCGAAGCTGTCTCGTGCGCTTCACG GAACAACTTCCGTGCTCAACGAGAGGACGGCCGCCTCGTCCTGACCTTCGTACCGAACGAAGCAATTCAACAACCGGACAGAGAAGTCGAGAAAACTGCC GAGGATCAATTCGAAGTCGAATTGGAGAATCCCGCCACCGAAAACCTAGAACAAGAAATGAAAATGGACGATGAAGAAGAACAAGGGGAAGAAACAGAGG AGGTGGAGGAGAATAAATTTGAAAGGGAGGAAGCGCCAAAGCTGACAAATGGAATGATGAACTACCACAGGCTGGCGGTTATCATGAATAAGCCGATCTC AAGAAACCAAACTTGCTGGCCGAAAAAGGCCGAAATCAACAAGGAAGAAGAACGGACGATGAAGTCAATCGCGCCACTCACACAGTCTCTCCCACCACGA CCGCCAAAATCATCGGCGGTCGTGAAAGCAGTGGTGGGAGCGGTCAGGAAGGAAGAGGCCGCGGCCAACGTGGCGACAGCTTCTTCCTTTAATGCTTACG AGTGTTGCTGGAAGTCCAAGCCTATGCTAGCGAAGTCCGTACTCGGTCCAACTATGACACAAAACATCAACATCAATCATAACAATTACAATTCGGGTAC AACGAAATTTGTGATGTCGGGTCAACATCAACAACATCTGGATTTGGTGACAAAGAGAGGGGACTACTTCGTGCCGTTGGTCAAAGGATGCAAAGAGTCG CGAAGGTCAATTCTGTTCTGGGAGCCGTATTGCATTGCTACTTCCTGA
AA sequence Show only first row Show all	>Lus10004098 pacid=23147817 polypeptide=Lus10004098 locus=Lus10004098.g ID=Lus10004098.BGIv1.0 annot-version=v1.0 MSAATALSRSFGGLSGQRQGIVSILGNNSADLVTTKSSSPLPPTPPPLSLRRTLSADMSSNTWQIARTTDFASSPMKKIASTNELRLLPNEKFRQDQQPP APTGGLCDTWSAIMSAQKAKEEDKDLSPPYIHPLVRQSKSCLSEKSLEICTESLGSETGSEGFSSNTSSESGDNENEQEEQTKEADKAIVDPPPTMQKFD MEDLRIAKLNSNNFVSNGVSKKSLLPRSFPPPIPSLAHGAAATETLHMRPHRDNGRLVLEAVSCASRNNFRAQREDGRLVLTFVPNEAIQQPDREVEKTA EDQFEVELENPATENLEQEMKMDDEEEQGEETEEVEENKFEREEAPKLTNGMMNYHRLAVIMNKPISRNQTCWPKKAEINKEEERTMKSIAPLTQSLPPR PPKSSAVVKAVVGAVRKEEAAANVATASSFNAYECCWKSKPMLAKSVLGPTMTQNININHNNYNSGTTKFVMSGQHQQHLDLVTKRGDYFVPLVKGCKES RRSILFWEPYCIATS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22090			Protein of unknown function (D...		Lus10004098 [exp]	0	1
AT4G24015			RING/U-box superfamily protein...		Lus10032418 [exp]	2.4	0.8683
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10038784 [exp]	4.9	0.8638
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Lus10026730 [exp]	7.3	0.8246
AT1G18610			Galactose oxidase/kelch repeat...		Lus10010913 [exp]	9.8	0.8516
AT5G06470			Glutaredoxin family protein (....		Lus10021255 [exp]	13.5	0.8308
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10043063 [exp]	13.7	0.8655
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Lus10015016 [exp]	15.0	0.8159
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004927 [exp]	15.3	0.8388
AT5G22090			Protein of unknown function (D...		Lus10013353 [exp]	17.2	0.8628
AT4G14740			Plant protein of unknown funct...		Lus10039370 [exp]	19.2	0.8414

Compare expression of checked genes

Lus10004098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.