Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22080 337 / 6e-118 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G65280 72 / 4e-14 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G05750 53 / 6e-08 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G57340 52 / 2e-07 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) AT3G06340 51 / 4e-07 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT5G53150 51 / 4e-07 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G18750 49 / 1e-06 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G59610 49 / 1e-06 Chaperone DnaJ-domain superfamily protein (.1.2) AT3G04980 48 / 4e-06 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G49060 47 / 4e-06 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013354 [exp] 413 / 9e-148 AT5G22080 375 / 4e-133 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10017919 [exp] 69 / 3e-13 AT1G65280 554 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014815 [exp] 69 / 6e-13 AT1G65280 522 / 4e-179 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10030079 [exp] 55 / 1e-08 AT3G57340 420 / 6e-147 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10019421 [exp] 52 / 2e-07 AT3G57340 408 / 3e-142 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10017085 [exp] 51 / 3e-07 AT5G49580 670 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10012795 [exp] 50 / 6e-07 AT5G18750 311 / 2e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10033983 [exp] 50 / 6e-07 AT5G27240 557 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10043277 [exp] 50 / 1e-06 AT3G57340 408 / 2e-140 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G215800 [exp] 367 / 6e-130 AT5G22080 324 / 5e-113 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.009G016700 [exp] 342 / 9e-120 AT5G22080 313 / 1e-108 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.019G083700 [exp] 65 / 8e-12 AT1G65280 479 / 2e-163 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.006G153700 [exp] 56 / 4e-09 AT3G57340 391 / 8e-136 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Potri.010G148900 [exp] 55 / 2e-08 AT5G49580 613 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G013200 [exp] 48 / 3e-06 AT5G49060 327 / 3e-110 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Potri.008G211300 [exp] 47 / 3e-06 AT3G06778 170 / 3e-52 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G196201 [exp] 47 / 5e-06 AT3G06340 249 / 6e-77 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.008G101800 [exp] 47 / 6e-06 AT5G49580 355 / 1e-116 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G122300 [exp] 47 / 7e-06 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10004099 pacid=23147819 polypeptide=Lus10004099 locus=Lus10004099.g ID=Lus10004099.BGIv1.0 annot-version=v1.0 ATGGGAGAAGCCTCTGGCACCACTGCCAAGGCGGCCGCCGCCGACGATCTACTTCTCAAGAGCTTCTTCGCCGAAGTCAGCGAAGTCGAGAGGGATAACG AAGTCCTTAGAATCCTCTCCTGCTTCAAATTAAATCCGTTTGAACATCTAAGACTGTCGTTTGATTCATCACCAGAGGATGTGAAAAAGCAGTATCGTAA GTTATCTTTGTTGGTGCATCCTGACAAATGCAAGCATCCTAAAGCGCAAGAAGCTTTCGGTGCGTTGGCCAAAGCCCAGGAGCTATTGCTTGACCAACAG GAAAGAGACTATGTTCTTAGCCAAGTAAAAGCAGCCAAAGATGAACTTCGAGCGAAGAGGAGAAAACAGATGAAGAAAGATACAGCCAGCAAAGCAAAGT CAATGGTTGATGAGGGGAAATATGAGCAAGAATTCGAAAGGTCGGACGAGTTCCAGGAGCAGCTGAAGCTCAAAGTCCGGGAAATATTGACCGAACAGGA ATGGCGAAGGAGGAAAATGCAAATGAGGTTATCAGAAGAAGAAGGCCGAGTGAAGAAAGACGAAGAAGAGCAAAAGGAGATGTGGAAGAGGAAAAGAGAG CACGAGGAGCAATGGGAGGGAACAAGAGAAAAGAGGGTGTCGAGCTGGAGAGATTTCATGAAGACGGGCAAGAAGGGGAAGAAGGGAGAAATTCGGCCAC CAAAGCTGAAGACAGAGGATCCCAACAAATCATATGTTCAGAGACCGGTCAAGAAAGGCTGA
AA sequence Show only first row Show all	>Lus10004099 pacid=23147819 polypeptide=Lus10004099 locus=Lus10004099.g ID=Lus10004099.BGIv1.0 annot-version=v1.0 MGEASGTTAKAAAADDLLLKSFFAEVSEVERDNEVLRILSCFKLNPFEHLRLSFDSSPEDVKKQYRKLSLLVHPDKCKHPKAQEAFGALAKAQELLLDQQ ERDYVLSQVKAAKDELRAKRRKQMKKDTASKAKSMVDEGKYEQEFERSDEFQEQLKLKVREILTEQEWRRRKMQMRLSEEEGRVKKDEEEQKEMWKRKRE HEEQWEGTREKRVSSWRDFMKTGKKGKKGEIRPPKLKTEDPNKSYVQRPVKKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10004099 [exp]	0	1
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10013354 [exp]	1.0	0.9535
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10014455 [exp]	2.0	0.9339
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10038139 [exp]	2.0	0.9182
AT1G03330			Small nuclear ribonucleoprotei...		Lus10042686 [exp]	2.4	0.9202
AT4G08580			microfibrillar-associated prot...		Lus10020319 [exp]	4.2	0.9078
AT1G03330			Small nuclear ribonucleoprotei...		Lus10029641 [exp]	6.3	0.9059
AT2G37480			unknown protein		Lus10023755 [exp]	7.5	0.9119
AT4G32960			unknown protein		Lus10007456 [exp]	8.8	0.9003
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10017686 [exp]	10.2	0.9164
AT3G19460			Reticulon family protein (.1.2...		Lus10019812 [exp]	10.8	0.8818

Compare expression of checked genes

Lus10004099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.