Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27210 1565 / 0 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) AT1G08420 1557 / 0 BSL2 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) AT4G03080 644 / 0 BSL1 BRI1 suppressor 1 (BSU1)-like 1 (.1) AT1G03445 456 / 5e-147 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT5G59160 271 / 4e-83 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT5G27840 270 / 1e-82 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT1G64040 269 / 4e-82 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT2G39840 266 / 3e-81 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT3G46820 261 / 1e-79 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT2G29400 261 / 3e-79 PP1-AT, TOPP1 type one protein phosphatase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013357 [exp] 1680 / 0 AT1G08420 1713 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10008369 [exp] 1621 / 0 AT1G08420 1747 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10009783 [exp] 523 / 3e-172 AT2G27210 1281 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Lus10024772 [exp] 391 / 2e-129 AT4G03080 478 / 5e-165 BRI1 suppressor 1 (BSU1)-like 1 (.1) Lus10024773 [exp] 393 / 2e-125 AT4G03080 853 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Lus10004989 [exp] 266 / 2e-81 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10016489 [exp] 263 / 3e-80 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10030163 [exp] 262 / 1e-79 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10001025 [exp] 262 / 1e-79 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G215700 [exp] 1591 / 0 AT2G27210 1626 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.009G016900 [exp] 1577 / 0 AT2G27210 1588 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.014G135800 [exp] 633 / 0 AT4G03080 1441 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.002G213300 [exp] 627 / 0 AT4G03080 1439 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.005G024100 [exp] 276 / 6e-85 AT5G27840 553 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) Potri.013G045900 [exp] 270 / 1e-82 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 270 / 2e-82 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G245700 [exp] 268 / 5e-82 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.009G037700 [exp] 265 / 1e-80 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.013G014700 [exp] 264 / 6e-80 AT3G05580 563 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10004100 pacid=23147801 polypeptide=Lus10004100 locus=Lus10004100.g ID=Lus10004100.BGIv1.0 annot-version=v1.0 ATGGATGAGGATTCGTCGATGGCGTCGGAGCCCGATCAGGATCCGCCAGCGCAGAACGATTCGTCTTCAGCGGATAGGGAGCAGGTAAGGGAGAATCCGC AGCCATTTGGATCTTTGGCCGCAACGGCGGCAGCGTCGTCTCCTCCTTCGCCGACGTTGCAGCAGCCTGTGACGGCCGAGGTTCAGGTGCAGCAGCAGAG TCCTGTGGCTGGCCCAAGGCCTGCGCCGACGTATTCGGTTGTGAATGCTATTATAGAGAAGAAGGAAGATGGTTCCGGGCCAAGGTTGATTTTGTTTGGT GGTGCCACCGGGCTGGAGGGAAATTCTGGCGCGGGGACTCCTTCCTCAGCTGGCGGTGCTGGCATTCGGCTATCCGGGGCCACTGCTGATGTCCATTGTT ATGATGTTTTGACAAATAAATGGTCCAGGCTTACACCTATTGGAGAACCACCTACTCCTAGGGCTGCTCATGTGGCAACTGCTGTGGGAACTATGGTGGT TATTCAGGGTGGAATTGGTCCAGCTGGTTTATCAGCGGAGGATCTTCACGTCCTTGACCTCACACAACAACGTCCACGGTGGCATAGAGTTGTTGTTCAA GGCCCTGGTCCTGGGCCACGTTATGGCCACGTGATGGCATTGGTGGGTCAACGGTATCTCATGGCTATTGGAGGGAATGATGGAAAGCGGCCATTGTCTG ATGTATGGGCCCTTGACACAGCTGCCAAGCCTTACGAGTGGCGGAAGCTGGAACCAGAAGGGGAAGGTCCACCACCATGCATGTATGCCACTGCAAGTGC TCGATCAGATGGTCTCCTGCTGCTTTGCGGAGGGAGAGATGCAAATAGTGTGCCGTTGGCAAGTGCATATGGGCTTGCCAAACATAGGGATGGCCGGTGG GAATGGGCTATTGCTCCTGGTGTTTCTCCATCTCCTAGATACCAACATGCAGCTGTTTTTGTTAACGCGAGACTTCATGTGTCGGGAGGAGCACTTGGTG GGGGTCGTATGGTAGAGGATTCATCAAGTGTTGCAGTGCTGGATACTGCAGCTGGAGTTTGGTGTGATACAAAGTCTGTTATTACTAGTCCAAGGACCGG CAGATACAGTGCTGATGCTGCCGGTGGAGATGCTGCTGTTGAGTTAACAAGACGTTGCAGGCATGCTGCTGCTGCAGTTGGTGATTTGATATTCATTTAT GGTGGTTTACGTGGTGGGGTGTTGCTTGATGATCTACTTGTTGCTGAAGATCTTGCTGCTGCTGAAACAACAACTGCAGCCTCCCTTGCTGCAGCTGCTG CATCTAATTTACCAGGAGCGAGAATGGGTGGAAGATATGGGTTTATTGATGATAGAAGCAGGCAAACAATGTCAGATGCATCACCAGATGGTTCTGTAGT CCTGGGTAACCCTGTTGCCCCTCCTGTAAACGGTGATATGTACACTGATATTAGCACAGAGAACGCCATGCTTCAGGGATCTCGGAGAACTTCAAAAGGT GTTGAATACTTGGTTGAAGCATCGGCCGCAGAAGCTGAGGCTATCACTGCAACTCTGGCTGCTGCTAAGGCACGGCAAGTGAATGGAGAGGTTGAACTGC CGGATAGGGAGCGTACTGCAGAAGCTACCCCTAGTGGCAAGCAACTATTAACTATGATTAAACCTGATTCTATTGGATTAAATCACATTCCTCCAGCTGG AGTTCGGTTACATCACAGAGCGGTTGTTATAGCTGCTGAGACAGGTGGAGCTTTAGGTGGCATGGTTAGGCAGCTCTCAATTGATCAGTTTGAAAATGAA GGCAGAAGGGTAAGCTATGGGACTCCTGAGAGTGCAACTGCAGCAAGAAAATTGTTGGACAGACAGATGTCTATCAACAGCGTGCCCAAGAAGGTCATTG CACATCTTCTTAAGCCTCGTGGCTGGAAGCCTCCAGTTCGCCGGCAGTTTTTCTTAGATTGTAATGAGATAGCAGATTTATGTGACAGTGCTGAAAGAAT ATTTTCAAGTGAACCAAGTGTTTTGCAACTTAAAGCTCCGATAAAGATATTTGGTGATTTGCATGGACAATTTGGGGATCTTATGCGTCTGTTTGATGAG TATGGTGCCCCTTCAACTGCTGGCGACATCTCATACATCGATTATCTCTTTTTAGGAGATTATGTTGATCGTGGTCAACACAGTCTGGAGACAATAGCAC TTTTGCTTGCCTTAAAGGTTGAATATCCGAATAACGTGCATTTAATTCGCGGGAACCATGAAGCTGCAGACATCAATGCCCTGTTTGGCTTCCGGATTGA GTGTATTGAACGAATGGGTGAAAGGGATGGAATTTGGGTGTGGCATCGGATCAATCGTTTGTTCAATTGGCTTCCTTTGGCGGCACTGATCGAGAAGAAA ATCATATGCATGCATGGTGGTATAGGTCGCTCAATAAATCACGTGGAACAAATTGAAACCATTCAGCGGCCAATTACCATGGAAGCAGGCTCAATAGTGC TCATGGATTTGTTATGGTCTGATCCAACTGAAAATGACAGTGTGGAGGGATTGCGTCCGAATGCCAGAGGTCCTGGCTTGGTAACCTTTGGGCCCGATCG AGTCATGGAGTTCTGCAATAACAATGATCTGCAGTTGATCGTACGTGCACATGAATGTGTGATGGATGGCTTTGAACGTTTTGCGCAAGGGCATCTCATC ACACTCTTTTCTGCCACCAATTATTGTGGCACTGCGAATAATGCCGGGGCAATCCTCGTTCTGGGAAGAGATCTTGTAGTGGTTCCGAAATTGATCCATC CTTTGCCGCCGGCCATATCTTCACCAGAGGCTTCGCCTGAACGTCACATTGAAGATACATGGATGCAGGAGTTGAACGCTAATAGACCCCCGACACCAAC TAGGGGCCGTCCTCAAGTAGCGAACGACAAGGGCTCGCTTGCCTGGATATAA
AA sequence Show only first row Show all	>Lus10004100 pacid=23147801 polypeptide=Lus10004100 locus=Lus10004100.g ID=Lus10004100.BGIv1.0 annot-version=v1.0 MDEDSSMASEPDQDPPAQNDSSSADREQVRENPQPFGSLAATAAASSPPSPTLQQPVTAEVQVQQQSPVAGPRPAPTYSVVNAIIEKKEDGSGPRLILFG GATGLEGNSGAGTPSSAGGAGIRLSGATADVHCYDVLTNKWSRLTPIGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQ GPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLSDVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRW EWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVITSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIY GGLRGGVLLDDLLVAEDLAAAETTTAASLAAAAASNLPGARMGGRYGFIDDRSRQTMSDASPDGSVVLGNPVAPPVNGDMYTDISTENAMLQGSRRTSKG VEYLVEASAAEAEAITATLAAAKARQVNGEVELPDRERTAEATPSGKQLLTMIKPDSIGLNHIPPAGVRLHHRAVVIAAETGGALGGMVRQLSIDQFENE GRRVSYGTPESATAARKLLDRQMSINSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDE YGAPSTAGDISYIDYLFLGDYVDRGQHSLETIALLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWVWHRINRLFNWLPLAALIEKK IICMHGGIGRSINHVEQIETIQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLI TLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPEASPERHIEDTWMQELNANRPPTPTRGRPQVANDKGSLAWI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10004100 [exp]	0	1
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10013357 [exp]	1.0	0.9237
AT5G11700			unknown protein		Lus10043045 [exp]	4.0	0.8688
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Lus10009531 [exp]	4.2	0.8664
AT4G11800			Calcineurin-like metallo-phosp...		Lus10042668 [exp]	4.6	0.8737
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Lus10020351 [exp]	4.7	0.8550
AT2G38610			RNA-binding KH domain-containi...		Lus10035608 [exp]	6.4	0.8195
AT5G28350			Quinoprotein amine dehydrogena...		Lus10018824 [exp]	7.9	0.8970
AT1G12450			SNARE associated Golgi protein...		Lus10028900 [exp]	8.2	0.8415
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Lus10024455 [exp]	8.7	0.8303
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10008035 [exp]	9.4	0.8338

Compare expression of checked genes

Lus10004100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.