Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04620 458 / 5e-149 Cation efflux family protein (.1) AT3G58810 70 / 3e-12 ATMTPA2, MTP3, MTPA2, ATMTP3 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) AT2G29410 67 / 1e-11 ATMTPB1, MTPB1 metal tolerance protein B1 (.1) AT3G12100 67 / 3e-11 Cation efflux family protein (.1.2) AT2G46800 64 / 2e-10 ATMTP1, ZAT1, ZAT, ATCDF1 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) AT3G61940 60 / 2e-09 ATMTPA1, MTPA1 Cation efflux family protein (.1) AT2G47830 44 / 0.0006 Cation efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013358 [exp] 283 / 3e-82 AT2G04620 783 / 0.0 Cation efflux family protein (.1) Lus10004168 [exp] 69 / 7e-12 AT3G12100 511 / 0.0 Cation efflux family protein (.1.2) Lus10002674 [exp] 67 / 3e-11 AT3G58810 503 / 5e-179 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) Lus10012604 [exp] 66 / 4e-11 AT3G61940 500 / 2e-177 Cation efflux family protein (.1) Lus10016487 [exp] 62 / 7e-10 AT2G29410 345 / 8e-117 metal tolerance protein B1 (.1) Lus10040744 [exp] 61 / 1e-09 AT2G29410 344 / 1e-116 metal tolerance protein B1 (.1) Lus10021058 [exp] 57 / 4e-08 AT3G12100 461 / 1e-162 Cation efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G110300 [exp] 515 / 4e-170 AT2G04620 483 / 2e-158 Cation efflux family protein (.1) Potri.016G045200 [exp] 69 / 4e-12 AT3G12100 536 / 0.0 Cation efflux family protein (.1.2) Potri.001G245800 [exp] 67 / 2e-11 AT2G29410 336 / 7e-114 metal tolerance protein B1 (.1) Potri.014G106200 [exp] 62 / 1e-09 AT2G46800 277 / 4e-90 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.002G180100 [exp] 61 / 2e-09 AT2G46800 502 / 3e-178 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.011G150600 [exp] 61 / 2e-09 AT3G58810 281 / 2e-91 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) Potri.001G450900 [exp] 60 / 3e-09 AT2G46800 285 / 3e-92 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [flax] [poplar] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Lus10004102 pacid=23147821 polypeptide=Lus10004102 locus=Lus10004102.g ID=Lus10004102.BGIv1.0 annot-version=v1.0 ATGGCGGAGGGTAATGACCACCGCCGCCAGAATCGGCCCGAACGGCTCTCAGTTTCATCCCTACCCATAAATTACTTCGCTCAACCGGCGGCCGGAGCCA CATCTCGAGCTTACCCTGCTCCCAACTATGCATCCACCCCAACCCCGACCCCGTCGAAACAACGCCTATCTTCGGCCTCCTTGTACAAATCATCATCTTC GAAATCATCATCGTCATCCTCCATTTCATTCCTCTTGCTTCTCCTCTTCTCCCTTCGCTCACTGTACTCTCTCCTCCCATTTCTCCGGTCTTCTCCTTCA TTTTCCCTCTTCCCTTTCTCATTCCTCGTCTCCCTCCTCTCTTTCCTTCTCTCCTTCTGTTGCTCTCTCTTCTCATCCAAAACCCCTTTGTCTCGCCTCC TCCGAAACCCCACCGCCACTTTCAAATCCAGCAATAACAACAAAAACCCGATTTTCAGCCTCTCCTCCCTCTCCCCCTCTCAGCACAAGCTCCTCCTCGC CAAATCGTTCGTCCTTGCTGTCGTCTTTCTACTTAGGTTCCAGGCTCTCAGGTACTGTGGAACTGCGGCCATGATCCTTGCTGAATTGTGCGGCAACATT GTTGCTCGTGTTGTTGCTCTGGGGAAAAGGCACAAACTTTCTCGGGATGGGAATGTTGACGGTGGTGGTAAGAACTTTCCTGGGTTTCTGGCACTCTTTG TTGGATTGTTCTTGTTGGCTATGAGCTGGGATCGGATTGACTGTTTCCCATTTTCGACTTCCTACGTTGCTAGATTTGGTTGGTCAGTGGTTCCTGGAGA GAAGTGTGTTAGAGTGTGGTTGATGTTACTTCCCTTCATGTCTGGCTTTTTGGGCTCTTACGAGCGTATTTCAATGAATTGGATTGCGATCAGGCAACTG GGACAAGCCAGAGTTAGATTAGTTTCCTTGTTTTATACTACCCTTCTGTTGTTTGTTCCTGCCGGTTTGAGCTTTGCTATGATTGAAGGTGGTGATCAGG GGGTTTCTCTTGGGAGTTTAGGATGGCCTTTGGCAAATACAGTTTTTTTTGGTGTGCTTCTAAGTGAGAGTTACGCTAATGAGAAGCTCCTTACTTCCAA GGATTTCCAGAAAGATTTCTCCATCACATTTGTTTGCACAATTGTCTTGGAGCTCTTCTATTTCCCTGAGCTGTCACTCTGGGGGCTTTTGTTTTGTGGG TTTCTGCTATATATTGGTGTTAGGAGGCTGGATCTTGTTAATTCAGATCGTCTTGAGTTGGGGATGCAATCATCAGAGCCTTACATTAATTTGGTTGCTA AGCCTTTACGCCATATTTTGAGTGAGAGGAAGTCTCGGAAGATTGCACTGTTCCTTTTGATTAATGCTGCTTATATGGTTGTTGAATTTGTTGCTGGCTT CATGAGCAACAGTCTTGGATTGATATCAGATGCCTGCCACATGCTGTTTGATTGTGCCGCGCTAGCAATTGGTCTATATGCCTCCTATATTGCAAGACTA CCTGCAAATGACCAATATAACTATGGCCGTGGAAGGTTTGAAGTTCTGTCCGGATACGTGAATGCATTCTTTCTGGTTCTGGTTGGGGCATTAATTGTTC TGGAGTCGTTTGAGAGGATATTGGACCCGCAGGAGATATCAACTAGCAGCTTATTAGTAGTTTCAGTTGGAGGGCTTGTTGTGAATATTGTTGGGTTAAT CTTCTTCCATGAGGAACACCATCATGCTCATGGTGGGTCTGGATGCTCACATTCTCGTTCTGATTCCCACTCTCATTCACACTCACATTCTCACACTTCG CATGGTCACGGTCACAAAGATCATACTGAGTCGATATCAATTTCACGTGGCTATCTTGAGACAACATCGACCCGTCAACCTGAGCAAGATAAATCTCATC ACTGCACCAACCATCATGATAATGGTAACAGTTGCAACACGGAAAGCTCTCATTGCCATGATAACCCTGATCATGTTGACCATCATGATCAGCACAAACA TGACCACCACCACCATTCTCACAGCCATAACAATCACTCTGGTCATCATCATCATGAAGACGAATCAGAAAAGGCTTGTGTTGAGCCGGAACCTGAAAAG CACTACCATCACCATGTTGACCACAATATGGAGGGGATCTTTCTTCATGTTCTGGCAGATACCATGGGAAGTGTTGGTGTAGTCATATCTACACTCCTAA TTAAGTACAAAGGGTGGCTTGTTGCTGATCCTGCAAGCTCAATTTTCATTTCAGCTTTGATCATATCATCGGTCATTCCATTGCTTAGGAACTCTGCAGA GATATTGCTTCAAAGAGTTCCAAGGACACATGAGAAGGATGTGAAAAAAGCTTTGAATGATGTCAGAAGAATAGAGGGGGTATATGGCATTCAGACCTTC CACATTTGGAGCTTTACTAATACAGACGTCGTTGGGACTCTGCACCTCCATCTATCAGAGGACACTGATAGGACATCATTGAAGAAAAAGGTTGCACGGC GATTTCAGGACTCCGGAGTCGAGGATTTGACAGTACAGGTCGAGTGCATCAAGTGA
AA sequence Show only first row Show all	>Lus10004102 pacid=23147821 polypeptide=Lus10004102 locus=Lus10004102.g ID=Lus10004102.BGIv1.0 annot-version=v1.0 MAEGNDHRRQNRPERLSVSSLPINYFAQPAAGATSRAYPAPNYASTPTPTPSKQRLSSASLYKSSSSKSSSSSSISFLLLLLFSLRSLYSLLPFLRSSPS FSLFPFSFLVSLLSFLLSFCCSLFSSKTPLSRLLRNPTATFKSSNNNKNPIFSLSSLSPSQHKLLLAKSFVLAVVFLLRFQALRYCGTAAMILAELCGNI VARVVALGKRHKLSRDGNVDGGGKNFPGFLALFVGLFLLAMSWDRIDCFPFSTSYVARFGWSVVPGEKCVRVWLMLLPFMSGFLGSYERISMNWIAIRQL GQARVRLVSLFYTTLLLFVPAGLSFAMIEGGDQGVSLGSLGWPLANTVFFGVLLSESYANEKLLTSKDFQKDFSITFVCTIVLELFYFPELSLWGLLFCG FLLYIGVRRLDLVNSDRLELGMQSSEPYINLVAKPLRHILSERKSRKIALFLLINAAYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYIARL PANDQYNYGRGRFEVLSGYVNAFFLVLVGALIVLESFERILDPQEISTSSLLVVSVGGLVVNIVGLIFFHEEHHHAHGGSGCSHSRSDSHSHSHSHSHTS HGHGHKDHTESISISRGYLETTSTRQPEQDKSHHCTNHHDNGNSCNTESSHCHDNPDHVDHHDQHKHDHHHHSHSHNNHSGHHHHEDESEKACVEPEPEK HYHHHVDHNMEGIFLHVLADTMGSVGVVISTLLIKYKGWLVADPASSIFISALIISSVIPLLRNSAEILLQRVPRTHEKDVKKALNDVRRIEGVYGIQTF HIWSFTNTDVVGTLHLHLSEDTDRTSLKKKVARRFQDSGVEDLTVQVECIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04620			Cation efflux family protein (...		Lus10004102 [exp]	0	1
AT3G58050			unknown protein		Lus10021073 [exp]	3.2	0.8752
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10031982 [exp]	8.1	0.8637
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10036999 [exp]	10.2	0.8706
AT2G26920			Ubiquitin-associated/translati...		Lus10036096 [exp]	13.4	0.8668
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10043059 [exp]	15.4	0.8739
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10024267 [exp]	17.4	0.8545
AT2G33730			P-loop containing nucleoside t...		Lus10015187 [exp]	24.5	0.8615
AT3G07270			GTP cyclohydrolase I (.1.2)		Lus10003152 [exp]	25.1	0.8353
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10020512 [exp]	26.2	0.8144
AT4G02040			unknown protein		Lus10019069 [exp]	26.7	0.8385

Compare expression of checked genes

Lus10004102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.