Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08410 749 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G27200 687 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G52980 141 / 7e-36 AtNug2 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) AT3G07050 127 / 3e-31 NSN1 nucleostemin-like 1, GTP-binding family protein (.1) AT4G02790 66 / 2e-11 EMB3129 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) AT5G66470 48 / 1e-05 RNA binding;GTP binding (.1) AT5G11480 44 / 0.0001 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G22870 43 / 0.0003 EMB2001 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013359 [exp] 1088 / 0 AT1G08410 745 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028574 [exp] 129 / 2e-31 AT3G07050 743 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10018881 [exp] 126 / 1e-30 AT3G07050 706 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10023835 [exp] 102 / 1e-22 AT1G52980 708 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10021017 [exp] 81 / 4e-16 AT1G52980 591 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10018858 [exp] 74 / 1e-13 AT3G07050 622 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10014672 [exp] 63 / 3e-10 AT4G02790 414 / 8e-142 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10006927 [exp] 62 / 4e-10 AT4G02790 462 / 2e-164 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10032427 [exp] 45 / 0.0001 AT1G30960 489 / 1e-171 GTP-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G017000 [exp] 794 / 0 AT1G08410 755 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G402500 [exp] 147 / 4e-38 AT1G52980 811 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Potri.002G241100 [exp] 124 / 6e-30 AT3G07050 667 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Potri.005G209900 [exp] 61 / 1e-09 AT4G02790 476 / 5e-169 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Potri.007G021900 [exp] 48 / 1e-05 AT5G66470 535 / 0.0 RNA binding;GTP binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10004103 pacid=23147805 polypeptide=Lus10004103 locus=Lus10004103.g ID=Lus10004103.BGIv1.0 annot-version=v1.0 ATGGGGAAGAACGACAGTAAGACGGGGATTGGAAGAGCGTTGGTGAAGCACCACAACCAGATGATCCAGCAATCCAAGGAGAAAGGTCGATCCTACAGGT CCCAGCAGAACAAGGTTCTCGAGTCCATCACCGACGTCAACGACATTGACGCCGTCATCGGACAGGCCGACGAGGCCGAACGCCTCCTCTCCGTCGGCGA GAACCCCGCCCCTACTCATCCTATCAGCCTGCCGCCGTGGAGTCCTGAAATGTCGGTTGAGGAGCTTGATTCTAATGAAACACGGGCTTTCCTAATCTGG AGGCGGATCCTTGCCAGCTTAGAGGAGAATGAGAACCTTGTTCTTACACCATTTGAAAAGAATCTGGATATTTGGAGGCAACTTTGGCGGGTGCTTGAGC GCAGTGATCTTCTTGTGATGGTTGTTGATGCTCGAAATCCTTTGTTCTACCGCTGTCCTGATCTAGAGGAATATGCACGAGAGATCGATCAGCACAAGAG GACATTGCTCCTCGTAAACAAAGCCGATCTGTTGCCCTTTTCTGTCAGAAAGAAATGGGCCGAGTTCTTCCACCAAAATGATATTCTGTATGTCTTCTGG TCAGCCAAGGCTGCTACTGCAGTCCTTGAGGGCAAGAAGCTTACCAGCCATTGGGAAACTGAAACGACCGAGCAAGAGATGGATGATTCCGATACAAAAG TATATGGTAGGGAGGAGCTTCTATCACGTTTGCAATCTGAAGCAGAAAATATCGTCGAGCTGAGGAATAAATCACACTCTAGTAGTTCTGGCAAGTCACA GGACAGGAATTCGGCTGCGAAGAGTGTGATGGTGGGATTCGTTGGGTATCCCAATGTGGGAAAAAGTTCAACAATCAATGCTTTAGTGGGCCAGAAGCGA ACGGGAGTAACATCTACTCCGGGAAAGACAAAGCATTTCCAAACATTGATCATCTCCGAGGAGCTGACCTTATGTGATTGTCCCGGGCTAGTGTTCCCTT CCTTCTCTAGTTCGAGATACGAAATGATTGCTTCGGGGGTGTTGCCGATCGATCGTATGACCGAGCATAGAGAAGCAGTGCAAGTGGTTGCAAATCGAGT CCCGAGGCATGCCATTGAAGGTGTTTACAGAATAACCCTACCGAAGCCAAAGCCATATGAGCCACAATCTCGTCCTCCTTTGGCATCGGAGCTTCTAAGG TCTTACTGTGCATCAAGAGGGTACGTTGCGTCTAGTGGACTCCCGGATGAAACTAAAGCTGCCCGTATTATTCTGAAGGATTATATAGACGGGAAACTGC CGCACTATCAAATCCCTCCTGGAATCTCTGACGAGGAAGCAAACCTAGATGGTGATGCTATGGGGTCCGAAGAGGCTGAGTCAGATGGATCAGATGTCGA GGATTTGTCGGATGTGGAAGGGGAGAATCCACCGGCGATGGAGCATGTGTTGGAGGATTTGAACTCTTTCGACATAGCCAATGGCCTCGAGTCCAAGAAA GCTAATAAGGCGAAGAAGCTTAGCGAATCGTTCAAGCACCATAAGAAGCCTCAGAGGAAGAAAGATCGGTCGTGGAGGATTACGAATGATGGCGGAGATG GGATGCCTGTGGTGAGAGTATACCAGAAGCCTGCCAATACGGGTCCTCCGAAAACCGGTTGA
AA sequence Show only first row Show all	>Lus10004103 pacid=23147805 polypeptide=Lus10004103 locus=Lus10004103.g ID=Lus10004103.BGIv1.0 annot-version=v1.0 MGKNDSKTGIGRALVKHHNQMIQQSKEKGRSYRSQQNKVLESITDVNDIDAVIGQADEAERLLSVGENPAPTHPISLPPWSPEMSVEELDSNETRAFLIW RRILASLEENENLVLTPFEKNLDIWRQLWRVLERSDLLVMVVDARNPLFYRCPDLEEYAREIDQHKRTLLLVNKADLLPFSVRKKWAEFFHQNDILYVFW SAKAATAVLEGKKLTSHWETETTEQEMDDSDTKVYGREELLSRLQSEAENIVELRNKSHSSSSGKSQDRNSAAKSVMVGFVGYPNVGKSSTINALVGQKR TGVTSTPGKTKHFQTLIISEELTLCDCPGLVFPSFSSSRYEMIASGVLPIDRMTEHREAVQVVANRVPRHAIEGVYRITLPKPKPYEPQSRPPLASELLR SYCASRGYVASSGLPDETKAARIILKDYIDGKLPHYQIPPGISDEEANLDGDAMGSEEAESDGSDVEDLSDVEGENPPAMEHVLEDLNSFDIANGLESKK ANKAKKLSESFKHHKKPQRKKDRSWRITNDGGDGMPVVRVYQKPANTGPPKTG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08410			P-loop containing nucleoside t...		Lus10004103 [exp]	0	1
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10017243 [exp]	1.4	0.8377
AT1G08410			P-loop containing nucleoside t...		Lus10013359 [exp]	2.6	0.7710
AT4G35540			zinc ion binding;transcription...		Lus10014847 [exp]	11.6	0.7704
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10009183 [exp]	12.7	0.7880
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10030415 [exp]	15.6	0.7873
AT4G12130			Glycine cleavage T-protein fam...		Lus10024566 [exp]	16.1	0.7229
AT4G38150			Pentatricopeptide repeat (PPR)...		Lus10026570 [exp]	17.4	0.7491
AT1G26580			unknown protein		Lus10037097 [exp]	17.7	0.7182
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10014335 [exp]	24.0	0.7405
AT1G18850			unknown protein		Lus10024247 [exp]	25.1	0.7135

Compare expression of checked genes

Lus10004103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.