Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44160 526 / 0 Outer membrane OMP85 family protein (.1) AT3G48620 264 / 2e-86 Outer membrane OMP85 family protein (.1) AT5G19620 187 / 2e-53 TOC75-V, EMB213, TOC75, ATOEP80, OEP80 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) AT3G46740 52 / 3e-07 MAR1, TOC75-III, TOC75 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) AT4G09080 43 / 0.0003 TOC75-IV, ATTOC75-IV translocon at the outer envelope membrane of chloroplasts 75-IV, TRANSLOCON OUTER MEMBRANE COMPLEX 75-IV, Outer membrane OMP85 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013360 [exp] 593 / 0 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1) Lus10031839 [exp] 173 / 3e-48 AT5G19620 1030 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Lus10031272 [exp] 162 / 3e-44 AT5G19620 1018 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Lus10004978 [exp] 47 / 1e-05 AT3G46740 1117 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10001566 [exp] 46 / 4e-05 AT3G46740 1210 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10016508 [exp] 45 / 7e-05 AT3G46740 1179 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G017100 [exp] 526 / 0 AT3G44160 598 / 0.0 Outer membrane OMP85 family protein (.1) Potri.001G215500 [exp] 521 / 0 AT3G44160 581 / 0.0 Outer membrane OMP85 family protein (.1) Potri.001G019000 [exp] 178 / 4e-50 AT5G19620 936 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Potri.003G204900 [exp] 171 / 2e-47 AT5G19620 892 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Potri.003G158100 [exp] 52 / 5e-07 AT3G46740 1274 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Potri.001G072800 [exp] 50 / 2e-06 AT3G46740 1289 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [flax] [poplar] MBB PF01103 [flax] [poplar] Omp85 Omp85 superfamily domain
Representative CDS sequence Show only first row Show all	>Lus10004104 pacid=23147815 polypeptide=Lus10004104 locus=Lus10004104.g ID=Lus10004104.BGIv1.0 annot-version=v1.0 ATGGGAGCTCAGAAGAGCATTCATGCAGGCAAAGCCAAAATTAATGTGAATCTTGATTTGACCCACAAGCTATGCGCCTCTTTGATGCTCCCTCCTCTCA GGGACACTGGGAGTCCTCTATCACTAGTTATTGGAAGTCTTTGCATCAAGCACCCTAATCTGTTTGGTGGGAGTGAGAAGCTGGATGTTTCATTGGACAA AGGACTCTATGATTCAAACGTTTTAGTGGCGTTCAGAAGGCCAAGACCTAAGTGGCTTCCTCAACAATACTTTCATTCTGTTTCACCTGAAATCGGGGTA CACGGTGAGCCTGTCGACAATTTTTCTCGTTCCGGGAGTGGAGGTGTGAATTTGTCACGATTGTCAGTTGGTCTTGATCTAAATGAGCAATCAAGCTCTC ACTGGACCAGCTCAAGGAGTATTAAATTGGAGCATGTCCGCTTACTAAGTGATGATGGCCGCTCTATATCTAGGGATTTCGAGGGGTTTCCATTGACTTG CAGCGGTAATACACATGACAGCATGGTAGTTCTGAAGCAAGAATCCCGATATGTAGAGGCAAACGATCGCAGTTTTACTCGTTTCAGCATGACAGTAGAA CAAGGGGTTCCTGCTCTATCCAAGTGGCTAATTTTCAATAGGTTCAAATTTGTTGCAACGAAAGGTATCAGATTTGGACCTGCATTTTTCCTAGCAAGCC TGACAGGTGGTGCCATTGTAGGGGACATGGCTCCTTATCAAGCATTTGCAGTTGGTGGCCTTGGCAGTGTGCGAGGGTACGGTGAGGGTGGAGTCGGAGT AGGAAGATCGTGTTTAGTTGCTAATAACGAATTGACATTGCCCTTGAGTGAATCTTTGGACGGTGCGTTGTTCCTAGACTGCGGAACGGACATGGGTACC AGACGCTTTGTACCGGGAAATCCAGGACTGAGGCAAGGAAAACAGGGATGCGGAATGGGACTTGCGTATGGTATTCGATACAAGTCTCCAGCTGGTCATT TCCAGATCGACTATGCCGTCAATGCCTTCCAGCAGAAAACTATTTACTTAGGCCTCAGTAACCTCGGTCTATGA
AA sequence Show only first row Show all	>Lus10004104 pacid=23147815 polypeptide=Lus10004104 locus=Lus10004104.g ID=Lus10004104.BGIv1.0 annot-version=v1.0 MGAQKSIHAGKAKINVNLDLTHKLCASLMLPPLRDTGSPLSLVIGSLCIKHPNLFGGSEKLDVSLDKGLYDSNVLVAFRRPRPKWLPQQYFHSVSPEIGV HGEPVDNFSRSGSGGVNLSRLSVGLDLNEQSSSHWTSSRSIKLEHVRLLSDDGRSISRDFEGFPLTCSGNTHDSMVVLKQESRYVEANDRSFTRFSMTVE QGVPALSKWLIFNRFKFVATKGIRFGPAFFLASLTGGAIVGDMAPYQAFAVGGLGSVRGYGEGGVGVGRSCLVANNELTLPLSESLDGALFLDCGTDMGT RRFVPGNPGLRQGKQGCGMGLAYGIRYKSPAGHFQIDYAVNAFQQKTIYLGLSNLGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44160			Outer membrane OMP85 family pr...		Lus10004104 [exp]	0	1
					Lus10021851 [exp]	3.9	0.9584
					Lus10012440 [exp]	5.5	0.9584
AT4G19770			Glycosyl hydrolase family prot...		Lus10003408 [exp]	5.5	0.9158
AT2G20770		GCL2	GCR2-like 2 (.1)		Lus10031638 [exp]	6.0	0.9047
					Lus10008791 [exp]	6.7	0.9584
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	7.7	0.9584
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030546 [exp]	8.9	0.9506
					Lus10031183 [exp]	9.5	0.9504
					Lus10020451 [exp]	10.2	0.9498
					Lus10026713 [exp]	11.0	0.9489

Compare expression of checked genes

Lus10004104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.