Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61930 449 / 8e-158 APO3 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT1G64810 270 / 3e-87 APO1 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT5G57930 265 / 7e-85 APO2, EMB1629 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT3G21740 144 / 7e-40 APO4 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013360 [exp] 694 / 0 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1) Lus10005547 [exp] 296 / 1e-97 AT5G61930 306 / 4e-101 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10041933 [exp] 290 / 3e-95 AT5G61930 304 / 2e-100 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10038736 [exp] 262 / 6e-84 AT1G64810 562 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10039122 [exp] 259 / 5e-83 AT1G64810 567 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10019959 [exp] 258 / 5e-82 AT5G57930 521 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10039659 [exp] 162 / 9e-47 AT3G21740 385 / 4e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) Lus10041934 [exp] 142 / 5e-41 AT5G61930 162 / 4e-49 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10027182 [exp] 88 / 2e-19 AT3G21740 240 / 4e-78 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G106200 [exp] 476 / 3e-168 AT5G61930 500 / 3e-177 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.006G183900 [exp] 272 / 2e-87 AT5G57930 517 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.016G001400 [exp] 267 / 4e-86 AT1G64810 535 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.018G106400 [exp] 266 / 2e-85 AT5G57930 510 / 8e-180 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.017G037200 [exp] 148 / 2e-41 AT3G21740 384 / 5e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05634 [flax] [poplar] APO_RNA-bind APO RNA-binding
Representative CDS sequence Show only first row Show all	>Lus10004105 pacid=23147814 polypeptide=Lus10004105 locus=Lus10004105.g ID=Lus10004105.BGIv1.0 annot-version=v1.0 ATGAGCCAACACAAGTTCCTATCCTATCCACCCTGCGCTGCCGCTGACTACGACGATGTGCCCAAGCCTCGCAGGGGCAAGTCGGAGAGGAAGCCGTACG TCACTCCGGTGAGAGAGCTGATTCGCAGGGCAAGGTCCGAGCGAGAAGCTAGAAAGGCACATCCGGTGAGAATGCTCGAGGAACCGCCTGATAACGGACT GTTAGTCGCTGAGCTCGTTCATGTTGCTCGCCGAGTTTATCTAGCTCGACAGTCGCTCCTCTCCGGCATAACTAAGCTCCTCGCCAACATTCCCCTCCAG CGCTGCAAGTTCTGCCATGAGGTTCATGTTGGCCGTGCTGGTCACGAGATTCGAACTTGCAATGGCCCCGAAAGCGGTTCTCGTAGGGCTAGTCACGTAT GGAGGAAAGGTGGAGTTCAGGACGTGGTGTTCTTCCCCAAGTGCTTTCATCTCCCCGACCGTGTGGGTAATCCCAGAGTTACACATAAGGAGAAGCATCT CATAACGAGGATACCTGCCATTGTAGAGCTCTGCATCCAGGCTGGAGTTGACATTGATAAATATCCCACGAAGAGGAGGACAAAGCCTGTTTATTCTGTT GAAGGAAGAATTGTGGATTTCGAGGATGGGACCGAGGAACATGATGGTCATCAGACCTTCCATTCTGCAGCAAATTCTGTTTCTCCGTTAAAGAATGATC ATTCTGATTCCGACTTGAAGGAAACGAGCATAATGACTATGGAATCCTGGTTCGAGATGTTGGATGGAGCAAAGGAGATGATGGGTAAGTACAGTGTGTG GACATGTGGGTTTTGCCCTGAGGTTCAGGTTGGTCCAAAGGGACACAAGGTGAGGGATTGCAGGGCAACAAAGCACCAGGCTCGTGACGGGCAGCACGCT TGGCAGGAGGCTGTGATCGAAAATTTGGTGGGTCCAAATTACGTTTGGCATGTGGGTGGTGACGTGAATGGTCCCCCATTGCAGAACAGCTTGAAGAGAT ATTATGGGAAGGCTCCTGCACTAGTAGAACTGTGTGTTCAGGGTGGTGCACCTATTCCAGATAAGAAGTATCAGAGTATGATGAGACTGGATGTAGTTCC TCCTGATCGCGATGAAGTCGACCTTGTTGCTTGA
AA sequence Show only first row Show all	>Lus10004105 pacid=23147814 polypeptide=Lus10004105 locus=Lus10004105.g ID=Lus10004105.BGIv1.0 annot-version=v1.0 MSQHKFLSYPPCAAADYDDVPKPRRGKSERKPYVTPVRELIRRARSEREARKAHPVRMLEEPPDNGLLVAELVHVARRVYLARQSLLSGITKLLANIPLQ RCKFCHEVHVGRAGHEIRTCNGPESGSRRASHVWRKGGVQDVVFFPKCFHLPDRVGNPRVTHKEKHLITRIPAIVELCIQAGVDIDKYPTKRRTKPVYSV EGRIVDFEDGTEEHDGHQTFHSAANSVSPLKNDHSDSDLKETSIMTMESWFEMLDGAKEMMGKYSVWTCGFCPEVQVGPKGHKVRDCRATKHQARDGQHA WQEAVIENLVGPNYVWHVGGDVNGPPLQNSLKRYYGKAPALVELCVQGGAPIPDKKYQSMMRLDVVPPDRDEVDLVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10004105 [exp]	0	1
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10029646 [exp]	5.3	0.9101
AT5G09995			unknown protein		Lus10016816 [exp]	7.4	0.8826
AT4G33760			tRNA synthetase class II (D, K...		Lus10035657 [exp]	9.2	0.8720
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001586 [exp]	10.1	0.9074
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10026773 [exp]	16.2	0.8882
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026594 [exp]	16.5	0.8875
AT4G25730			FtsJ-like methyltransferase fa...		Lus10023555 [exp]	17.7	0.8811
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031908 [exp]	20.0	0.8579
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10020917 [exp]	22.4	0.8537
AT4G02930			GTP binding Elongation factor ...		Lus10008161 [exp]	25.0	0.8753

Compare expression of checked genes

Lus10004105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.