Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22070 434 / 4e-152 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G52060 357 / 5e-122 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G25330 269 / 3e-87 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G32290 256 / 7e-82 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 154 / 1e-42 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G31350 150 / 2e-41 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G51770 149 / 1e-40 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G11730 147 / 5e-40 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 146 / 5e-40 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 136 / 5e-36 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008954 [exp] 343 / 3e-116 AT3G52060 400 / 2e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10028866 [exp] 336 / 3e-113 AT3G52060 393 / 1e-136 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10013361 [exp] 316 / 1e-106 AT5G22070 212 / 6e-67 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001503 [exp] 267 / 2e-86 AT4G32290 382 / 7e-132 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002919 [exp] 264 / 3e-85 AT5G25330 389 / 4e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 148 / 2e-40 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 148 / 2e-40 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 149 / 8e-40 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036774 [exp] 145 / 2e-39 AT5G16170 350 / 1e-118 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G215400 [exp] 473 / 9e-167 AT5G22070 421 / 1e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.009G017300 [exp] 443 / 4e-155 AT5G22070 418 / 7e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G018600 [exp] 370 / 3e-127 AT3G52060 407 / 2e-142 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.010G242900 [exp] 361 / 1e-123 AT3G52060 407 / 9e-143 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.006G254800 [exp] 165 / 5e-48 AT4G32290 210 / 1e-65 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 154 / 6e-43 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 147 / 4e-40 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 145 / 1e-39 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 144 / 5e-39 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 143 / 1e-38 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10004106 pacid=23147812 polypeptide=Lus10004106 locus=Lus10004106.g ID=Lus10004106.BGIv1.0 annot-version=v1.0 ATGCCAGCCAACAACACTCAACCATCCACGGCGGGAACATTCCCCTCCGCCGCCTCCTCCTCCTCCTCTTCCTCCACCCTCCACCACTCCCAATCCTTCA AACTCCCATCCTCCGCCTCCATGTTCTCCACCCCTTTCCTCCTCACTTTCTCCTTAATCCTCTCCCTCCCGATCCTCTTCCTCCTCGCCCCACGCATCCT CCCTCCCCGCCCTTCCTCCGTCCCCATCCCTCCCTCCGACGAGCTCGAAGACCTCTCCCTCTTCCGCCGCGCTTCCTCTACTCCCATCTCTAAACCGTCC TCCTTCTCCCATCTCTCGTCCTCGAAGCCGAAACTCAAGATCGCTTTTCTGTTCCTAACCAACACCGATCTCCATTTCGCCCCTCTCTGGGAGCGGTTCT TCCGTCCTGTCTCCGGTAAGGACCTCTACAACGTCTACGTCCACGCGGATCCGACCTCCAACGTCACAAATCCTGGAGGCGTGTTCTTCGGCAGGTTCAT CGAACACGCCAAGAAGACGTACCGCGCTTCCCCGACTCTTATATCCGCCACGCGCCGCCTCCTCGCTACGGCGATCCTCGACGATCCGTCCAACGTTTTC TTCGCCGTAATATCGCAGTACTGTATCCCTCTGCATTCCTTTCAGTACGTCTACCATTCGCTGATCAAGTCCAGATCGTTCGATCTGTCCGCCGGATCTG ACGATCCGGCCGACGAGTCTTCCTTCGGGATCCGGCTACAGTACAGGAGCTTCATCGAGGTCGTGTCCAATGAGCCTAGGTTGTGGAAGAGGTATAATGC CCGCGGGAGGCACACGATGATGCCGGAGGTTCCGTTCGATGAGTTTAGGGTTGGATCTCAGTTCTTCGTTTTAACCCGCCGCCACGCGCTCATGGTGGTC AAGGATCGCCGGCTGTGGAAGAAGTTCAAACTGCCGTGTTACAGAGAAGACGAGTGTTACCCCGAGGAGCATTATTTTCCGACTCTGTTGTCGATGCAGG ATCTCAAGGGGGTTACTCAGTATACTCTGACGAAGGTGAACTGGACGGGGACGGTCAATGGCCATCCTTATACTTTCCGGCCGAGTGAAATCTCGCCGGC GTTGATTCAAGGGTTGAGAGAATCCAATTACTCCAGCTCTTACTTGTTCGCCAGGAAGTTTACTCCTGACTGTTTGGTGCCATTGTTGAAGATTGCTGAC AGAGTCATTTTCCGCGATTAG
AA sequence Show only first row Show all	>Lus10004106 pacid=23147812 polypeptide=Lus10004106 locus=Lus10004106.g ID=Lus10004106.BGIv1.0 annot-version=v1.0 MPANNTQPSTAGTFPSAASSSSSSSTLHHSQSFKLPSSASMFSTPFLLTFSLILSLPILFLLAPRILPPRPSSVPIPPSDELEDLSLFRRASSTPISKPS SFSHLSSSKPKLKIAFLFLTNTDLHFAPLWERFFRPVSGKDLYNVYVHADPTSNVTNPGGVFFGRFIEHAKKTYRASPTLISATRRLLATAILDDPSNVF FAVISQYCIPLHSFQYVYHSLIKSRSFDLSAGSDDPADESSFGIRLQYRSFIEVVSNEPRLWKRYNARGRHTMMPEVPFDEFRVGSQFFVLTRRHALMVV KDRRLWKKFKLPCYREDECYPEEHYFPTLLSMQDLKGVTQYTLTKVNWTGTVNGHPYTFRPSEISPALIQGLRESNYSSSYLFARKFTPDCLVPLLKIAD RVIFRD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22070			Core-2/I-branching beta-1,6-N-...		Lus10004106 [exp]	0	1
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021441 [exp]	2.0	0.8601
AT4G38690			PLC-like phosphodiesterases su...		Lus10025062 [exp]	3.5	0.8269
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10004977 [exp]	9.1	0.8598
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10001568 [exp]	15.0	0.8319
AT2G17200		DSK2	ubiquitin family protein (.1)		Lus10014433 [exp]	17.5	0.7799
AT5G22070			Core-2/I-branching beta-1,6-N-...		Lus10013361 [exp]	18.1	0.8129
AT5G53750			CBS domain-containing protein ...		Lus10029665 [exp]	19.1	0.8136
AT3G05500			Rubber elongation factor prote...		Lus10029892 [exp]	19.6	0.7562
AT4G17080			Histone H3 K4-specific methylt...		Lus10042858 [exp]	25.7	0.7728
AT2G31440			unknown protein		Lus10025574 [exp]	28.4	0.7911

Compare expression of checked genes

Lus10004106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.